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Amot angiomotin [ Mus musculus (house mouse) ]

Gene ID: 27494, updated on 27-Nov-2024

Summary

Official Symbol
Amotprovided by MGI
Official Full Name
angiomotinprovided by MGI
Primary source
MGI:MGI:108440
See related
Ensembl:ENSMUSG00000041688 AllianceGenome:MGI:108440
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sii6; CAG-2; D0Kist1
Summary
Predicted to enable angiostatin binding activity and signaling receptor activity. Acts upstream of or within several processes, including gastrulation; negative regulation of GTPase activity; and vasculogenesis. Located in bicellular tight junction; cytoplasmic vesicle; and lamellipodium. Is expressed in several structures, including egg cylinder; embryo endoderm; embryo mesoderm; and mesendoderm. Orthologous to human AMOT (angiomotin). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in limb E14.5 (RPKM 14.2), genital fat pad adult (RPKM 12.4) and 27 other tissues See more
Orthologs
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Genomic context

See Amot in Genome Data Viewer
Location:
X F2; X 66.72 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (144229420..144288145, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (145446424..145505966, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_48047 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene lipoma HMGIC fusion partner-like 1 Neighboring gene STARR-seq mESC enhancer starr_48048 Neighboring gene prefoldin 5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_48049 Neighboring gene predicted gene 6446

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • mKIAA1071, E230009N18Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables angiostatin binding ISO
Inferred from Sequence Orthology
more info
 
enables angiostatin binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables signaling receptor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within actin cytoskeleton organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in angiogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within blood vessel endothelial cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within blood vessel morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cell migration involved in gastrulation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within chemotaxis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of embryo development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in establishment of cell polarity involved in ameboidal cell migration IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within establishment of cell polarity involved in ameboidal cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within gastrulation with mouth forming second IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in hippo signaling IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within hippo signaling ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within in utero embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of GTPase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of angiogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of vascular permeability ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of blood vessel endothelial cell migration ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within protein localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within protein localization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of modification of postsynaptic actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of small GTPase mediated signal transduction IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within vasculogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of COP9 signalosome IEA
Inferred from Electronic Annotation
more info
 
part_of COP9 signalosome ISO
Inferred from Sequence Orthology
more info
 
located_in actin filament ISO
Inferred from Sequence Orthology
more info
 
located_in actin filament ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in bicellular tight junction IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in bicellular tight junction IDA
Inferred from Direct Assay
more info
PubMed 
located_in bicellular tight junction ISO
Inferred from Sequence Orthology
more info
 
located_in cell junction ISO
Inferred from Sequence Orthology
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasmic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
located_in endocytic vesicle ISO
Inferred from Sequence Orthology
more info
 
located_in external side of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
is_active_in lamellipodium IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in lamellipodium IDA
Inferred from Direct Assay
more info
PubMed 
located_in lamellipodium ISO
Inferred from Sequence Orthology
more info
 
located_in lamellipodium ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 
located_in ruffle ISO
Inferred from Sequence Orthology
more info
 
located_in stress fiber ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290274.2NP_001277203.1  angiomotin isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL807753
    UniProtKB/Swiss-Prot
    Q8VHG2
    Conserved Domains (2) summary
    COG1196
    Location:367664
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam12240
    Location:578785
    Angiomotin_C; Angiomotin C terminal
  2. NM_001403386.1NP_001390315.1  angiomotin isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL807753
    UniProtKB/TrEMBL
    A0A067XG49
    Related
    ENSMUSP00000108454.2, ENSMUST00000112835.8
  3. NM_001403387.1NP_001390316.1  angiomotin isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL807753
    UniProtKB/Swiss-Prot
    A2AMJ9, A2AMK0, Q6PFB8, Q6ZPZ1, Q8VHG2
    Related
    ENSMUSP00000108455.3, ENSMUST00000112836.9
  4. NM_001403388.1NP_001390317.1  angiomotin isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL807753
    UniProtKB/Swiss-Prot
    A2AMJ9, A2AMK0, Q6PFB8, Q6ZPZ1, Q8VHG2
  5. NM_001403389.1NP_001390318.1  angiomotin isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL807753
    UniProtKB/TrEMBL
    A0A067XG49
  6. NM_153319.4NP_695231.3  angiomotin isoform 1

    See identical proteins and their annotated locations for NP_695231.3

    Status: VALIDATED

    Source sequence(s)
    AL807753
    Consensus CDS
    CCDS72443.1
    UniProtKB/Swiss-Prot
    A2AMJ9, A2AMK0, Q6PFB8, Q6ZPZ1, Q8VHG2
    UniProtKB/TrEMBL
    F6QYS7
    Conserved Domains (4) summary
    PRK05641
    Location:10171049
    PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
    PRK07764
    Location:10141098
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam02463
    Location:418669
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam12240
    Location:578781
    Angiomotin_C; Angiomotin C terminal

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    144229420..144288145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528867.5XP_006528930.1  angiomotin isoform X3

    UniProtKB/TrEMBL
    F6QYS7
    Conserved Domains (4) summary
    COG1196
    Location:78375
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK05641
    Location:728760
    PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
    PRK07764
    Location:725809
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam12240
    Location:289492
    Angiomotin_C; Angiomotin C terminal