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AMD1 adenosylmethionine decarboxylase 1 [ Bos taurus (domestic cattle) ]

Gene ID: 280997, updated on 27-Dec-2024

Summary

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Official Symbol
AMD1provided by VGNC
Official Full Name
adenosylmethionine decarboxylase 1provided by VGNC
Primary source
VGNC:VGNC:25859
See related
BGD:BT12022
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See AMD1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (39424554..39445862, complement)

Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene ribosome production factor 2 homolog Neighboring gene general transcription factor IIIC subunit 6 Neighboring gene cyclin dependent kinase 19 Neighboring gene uncharacterized LOC112448039 Neighboring gene uncharacterized LOC132346098

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. Isolation of a cDNA clone encoding S-adenosylmethionine decarboxylase. Expression of the gene in mitogen-activated lymphocytes. Mach M, et al. J Biol Chem, 1986 Sep 5. PMID 3017942
  2. Cell-specific translational regulation of S-adenosylmethionine decarboxylase mRNA. Dependence on translation and coding capacity of the cis-acting upstream open reading frame. Hill JR, et al. J Biol Chem, 1993 Jan 5. PMID 8416975
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables adenosylmethionine decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables putrescine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spermidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-adenosylmethionine decarboxylase proenzyme
Names
S-adenosylmethionine decarboxylase 1
SAMDC
adoMetDC
NP_776415.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173990.2 → NP_776415.1  S-adenosylmethionine decarboxylase proenzyme

    See identical proteins and their annotated locations for NP_776415.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123795
    UniProtKB/Swiss-Prot
    P50243, Q08DE3
    UniProtKB/TrEMBL
    A0A3Q1LTI7
    Conserved Domains (1) summary
    pfam01536
    Location:4 → 325
    SAM_decarbox; Adenosylmethionine decarboxylase

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    39424554..39445862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P50243.1 GenPept UniProtKB/Swiss-Prot:P50243

Gene LinkOut

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