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LINC01465 long intergenic non-protein coding RNA 1465 [ Homo sapiens (human) ]

Gene ID: 283416, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01465provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1465provided by HGNC
Primary source
HGNC:HGNC:26364
See related
Ensembl:ENSG00000221949 AllianceGenome:HGNC:26364
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C12orf61
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Genomic context

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See LINC01465 in Genome Data Viewer
Location:
12q14.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (62601751..62603434, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (62580569..62582252, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (62995531..62997214, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene MON2 antisense RNA 1 Neighboring gene MON2 homolog, regulator of endosome-to-Golgi trafficking Neighboring gene RNA, U6 small nuclear 399, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:62995817-62996340 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:62996341-62996862 Neighboring gene H3K27ac hESC enhancers GRCh37_chr12:62996863-62997384 and GRCh37_chr12:62997385-62997906 Neighboring gene MIRLET7I host gene Neighboring gene NANOG hESC enhancer GRCh37_chr12:63022918-63023636 Neighboring gene microRNA let-7i Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:63023962-63024586 Neighboring gene MPRA-validated peak1753 silencer Neighboring gene small nucleolar RNA U13 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and validation of a novel long non-coding RNA (LINC01465) in ovarian cancer. Malgundkar SH, et al. Hum Cell, 2023 Mar. PMID 36513868
  2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Identification and validation of a novel long non-coding RNA (LINC01465) in ovarian cancer.
    Title: Identification and validation of a novel long non-coding RNA (LINC01465) in ovarian cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Clone Names

  • FLJ25590

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121682.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK098456, BC038738
    Related
    ENST00000408887.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    62601751..62603434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    62580569..62582252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175895.3: Suppressed sequence

    Description
    NM_175895.3: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N7H1.1 GenPept UniProtKB/Swiss-Prot:Q8N7H1

Gene LinkOut

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