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LINC01777 long intergenic non-protein coding RNA 1777 [ Homo sapiens (human) ]

Gene ID: 284661, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01777provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1777provided by HGNC
Primary source
HGNC:HGNC:52567
See related
Ensembl:ENSG00000235054 AllianceGenome:HGNC:52567
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01777 in Genome Data Viewer
Location:
1p36.32
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (4412051..4424684)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (3925590..3938190)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (4472111..4484744)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4037314-4037814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4037815-4038315 Neighboring gene long intergenic non-protein coding RNA 2780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4071131-4071631 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4086572-4087072 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_7992 and experimental_7995 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4093716-4094491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4118474-4118974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4118975-4119475 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:4170302-4171501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4178536-4179040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4179041-4179543 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4197352-4197952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4212141-4212642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4212643-4213142 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:4233037-4233538 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:4236159-4236736 Neighboring gene eukaryotic translation elongation factor 1 delta pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 132 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4388931-4389431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4401483-4401984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4401985-4402484 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:4440066-4441265 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4483073-4483573 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4485131-4485632 Neighboring gene uncharacterized LOC105376674 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4519759-4520604 Neighboring gene uncharacterized LOC124904578

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027088.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK093498, BC128214
    Related
    ENST00000423197.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    4412051..4424684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    3925590..3938190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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