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PAX6 paired box 6 [ Bos taurus (domestic cattle) ]

Gene ID: 286857, updated on 27-Dec-2024

Summary

Official Symbol
PAX6provided by VGNC
Official Full Name
paired box 6provided by VGNC
Primary source
VGNC:VGNC:32598
See related
BGD:BT15898; Ensembl:ENSBTAG00000004561
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
pax-6
Orthologs
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Genomic context

See PAX6 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (62559094..62588024, complement)

Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C24 Neighboring gene inner mitochondrial membrane peptidase subunit 1 Neighboring gene elongator acetyltransferase complex subunit 4 Neighboring gene uncharacterized LOC132342350 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC132342351

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

Expression

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

Pathways from PubChem

General gene information

Markers

General protein information

Preferred Names
paired box protein Pax-6
Names
oculorhombin
paired box gene 6 (aniridia, keratitis)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040645.1NP_001035735.1  paired box protein Pax-6

    See identical proteins and their annotated locations for NP_001035735.1

    Status: PROVISIONAL

    Source sequence(s)
    BC116038
    UniProtKB/Swiss-Prot
    Q1LZF1
    UniProtKB/TrEMBL
    A0AAA9SY94
    Related
    ENSBTAP00000005994.3, ENSBTAT00000005994.5
    Conserved Domains (2) summary
    smart00351
    Location:4128
    PAX; Paired Box domain
    pfam00046
    Location:214267
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    62559094..62588024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024975031.2XP_024830799.1  paired box protein Pax-6 isoform X3

    UniProtKB/TrEMBL
    A0AAA9S457
    Related
    ENSBTAP00000080718.1, ENSBTAT00000096275.1
    Conserved Domains (2) summary
    pfam00046
    Location:147200
    Homeobox; Homeobox domain
    cl21459
    Location:456
    HTH; Helix-turn-helix domains
  2. XM_010812717.4XP_010811019.1  paired box protein Pax-6 isoform X2

    See identical proteins and their annotated locations for XP_010811019.1

    UniProtKB/TrEMBL
    A0AAA9S457
    Conserved Domains (2) summary
    pfam00046
    Location:161214
    Homeobox; Homeobox domain
    cl21459
    Location:470
    HTH; Helix-turn-helix domains
  3. XM_059874578.1XP_059730561.1  paired box protein Pax-6 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M0D8, A0AAA9SY94
    Related
    ENSBTAP00000063429.1, ENSBTAT00000080697.2