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Tmsb15b2 thymosin beta 15B2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 286978, updated on 4-Jan-2025

Summary

Official Symbol
Tmsb15b2provided by RGD
Official Full Name
thymosin beta 15B2provided by RGD
Primary source
RGD:708373
See related
EnsemblRapid:ENSRNOG00000037661 AllianceGenome:RGD:708373
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tmsbl1
Summary
Predicted to enable actin monomer binding activity. Predicted to be involved in positive regulation of cell migration and sequestering of actin monomers. Predicted to act upstream of or within negative regulation of actin filament polymerization and negative regulation of stress fiber assembly. Predicted to be located in stress fiber. Predicted to be part of filamentous actin. Predicted to be active in cytoplasm. Orthologous to several human genes including TMSB15A (thymosin beta 15A). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 591.0), Brain (RPKM 149.4) and 6 other tissues See more
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Genomic context

See Tmsb15b2 in Genome Data Viewer
Location:
Xq32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (105090980..105093094, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (100298705..100300820, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (107612518..107614632, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene RAB9B, member RAS oncogene family Neighboring gene H2B.W histone 2 like Neighboring gene solute carrier family 25, member 53 Neighboring gene zinc finger, CCHC domain containing 18 Neighboring gene vacuolar ATPase assembly factor VMA21, pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables actin monomer binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables actin monomer binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of actin filament polymerization ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of stress fiber assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in sequestering of actin monomers IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within sequestering of actin monomers ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of filamentous actin ISO
Inferred from Sequence Orthology
more info
 
located_in stress fiber ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
thymosin beta-15B
Names
thymosin beta-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173313.2NP_775435.1  thymosin beta-15B

    See identical proteins and their annotated locations for NP_775435.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000021
    UniProtKB/TrEMBL
    D3ZJE8, P97563
    Related
    ENSRNOP00000053968.4, ENSRNOT00000057140.4
    Conserved Domains (1) summary
    pfam01290
    Location:339
    Thymosin; Thymosin beta-4 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    105090980..105093094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)