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AT5G01675 ncRNA [ Arabidopsis thaliana (thale cress) ]

Gene ID: 28720403, updated on 22-Aug-2024

Summary

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Gene symbol
AT5G01675
Gene description
ncRNA
Locus tag
AT5G01675
See related
Araport:AT5G01675
Gene type
ncRNA
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Natural antisense transcript overlaps with AT5G10140 (FLC)
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Genomic context

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See AT5G01675 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (3173371..3179600)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ethylene insensitive 3 family protein Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene UPSTREAM OF FLC protein (DUF966) Neighboring gene Thioesterase superfamily protein Neighboring gene myo-inositol-1-phosphate synthase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Natural temperature fluctuations promote COOLAIR regulation of FLC. Zhao Y, et al. Genes Dev, 2021 Jun. PMID 33985972, Free PMC Article
  2. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Swiezewski S, et al. Nature, 2009 Dec 10. PMID 20010688

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Natural temperature fluctuations promote COOLAIR regulation of FLC.
    Title: Natural temperature fluctuations promote COOLAIR regulation of FLC.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3173371..3179600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_142528.1 RNA Sequence

    Status: REVIEWED

  2. NR_142533.1 RNA Sequence

    Status: REVIEWED

  3. NR_142530.1 RNA Sequence

    Status: REVIEWED

  4. NR_142529.1 RNA Sequence

    Status: REVIEWED

  5. NR_142531.1 RNA Sequence

    Status: REVIEWED

  6. NR_142532.1 RNA Sequence

    Status: REVIEWED