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Armc7 armadillo repeat containing 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 287827, updated on 27-Nov-2024

Summary

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Official Symbol
Armc7provided by RGD
Official Full Name
armadillo repeat containing 7provided by RGD
Primary source
RGD:1310043
See related
EnsemblRapid:ENSRNOG00000042691 AllianceGenome:RGD:1310043
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310043
Summary
Orthologous to human ARMC7 (armadillo repeat containing 7). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Spleen (RPKM 33.6), Thymus (RPKM 33.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Armc7 in Genome Data Viewer
Location:
10q32.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (101222056..101238598)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (100723080..100739636)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (104036250..104052852)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene tripartite motif protein 80 Neighboring gene solute carrier family 16 member 5 Neighboring gene 5', 3'-nucleotidase, cytosolic Neighboring gene Jupiter microtubule associated homolog 1 Neighboring gene small nucleolar RNA SNORA19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
armadillo repeat-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127522.1 → NP_001120994.1  armadillo repeat-containing protein 7

    See identical proteins and their annotated locations for NP_001120994.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473948
    UniProtKB/TrEMBL
    A0A8J8YAR2, B2GUY5, E9PTF4
    Related
    ENSRNOP00000004844.8, ENSRNOT00000004843.8
    Conserved Domains (2) summary
    sd00043
    Location:17 → 43
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:87 → 122
    Arm; Armadillo/beta-catenin-like repeat

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    101222056..101238598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017597160.3 → XP_017452649.1  armadillo repeat-containing protein 7 isoform X4

  2. XM_006247711.5 → XP_006247773.2  armadillo repeat-containing protein 7 isoform X1

  3. XM_017597157.3 → XP_017452646.1  armadillo repeat-containing protein 7 isoform X2

    UniProtKB/TrEMBL
    A6HKN3

  4. XM_017597159.3 → XP_017452648.1  armadillo repeat-containing protein 7 isoform X3

    UniProtKB/TrEMBL
    A6HKN3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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