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Zbed5 zinc finger BED-type containing 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288622, updated on 4-Jan-2025

Summary

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Official Symbol
Zbed5provided by RGD
Official Full Name
zinc finger BED-type containing 5provided by RGD
Primary source
RGD:1559988
See related
EnsemblRapid:ENSRNOG00000000918 AllianceGenome:RGD:1559988
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Scand3; Chchd2l2
Summary
Orthologous to human ZBED5 (zinc finger BED-type containing 5). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Adrenal (RPKM 393.8), Heart (RPKM 367.0) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See Zbed5 in Genome Data Viewer
Location:
12q13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (32443687..32449817, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (26807652..26813706, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (30308469..30314520, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene vitamin K epoxide reductase complex, subunit 1-like 1 Neighboring gene transfer RNA alanine (anticodon AGC) 84 Neighboring gene nuclear protein 2, transcriptional regulator Neighboring gene MLV-related proviral Env polyprotein-like Neighboring gene protein NYNRIN-like Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil-helix-coiled-coil-helix domain-containing protein 2
Names
SCAN domain containing 3
coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2
zinc finger BED domain-containing protein 5
NP_001099394.1
XP_063127236.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105924.1 → NP_001099394.1  coiled-coil-helix-coiled-coil-helix domain-containing protein 2

    See identical proteins and their annotated locations for NP_001099394.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473973
    UniProtKB/TrEMBL
    A6J0P3, D3ZTR5
    Related
    ENSRNOP00000001220.5, ENSRNOT00000001220.9
    Conserved Domains (3) summary
    pfam05699
    Location:673 → 737
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam06747
    Location:117 → 148
    CHCH; CHCH domain
    pfam14291
    Location:312 → 408
    DUF4371; Domain of unknown function (DUF4371)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    32443687..32449817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063271166.1 → XP_063127236.1  coiled-coil-helix-coiled-coil-helix domain-containing protein 2 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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