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GVI51_I05203 transcription initiation factor IIA subunit gamma [ Nakaseomyces glabratus ]

Gene ID: 2889267, updated on 6-Dec-2024

Summary

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Gene symbol
GVI51_I05203
Gene description
transcription initiation factor IIA subunit gamma
Locus tag
GVI51_I05203
See related
FungiDB:GVI51_I05203; VEuPathDB:GVI51_I05203
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nakaseomyces glabratus (strain: ATCC 2001, nat-host: Homo sapiens, culture-collection: ATCC:2001, type-material: type material of Cryptococcus glabratus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces
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Genomic context

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See GVI51_I05203 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_088959.1 (518146..518508, complement)

Chromosome I - NC_088959.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene cleavage polyadenylation factor subunit MPE1 Neighboring gene E2 ubiquitin-conjugating protein UBC6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_088959.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays. Xu Z, et al. Mol Microbiol, 2020 Jun. PMID 32068314
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • CAGL0I05434g
    Ortholog(s) have RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly, TBP-class protein binding activity

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIA subunit gamma
XP_447485.1
  • CAGL0I05434g
    Ortholog(s) have RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly, TBP-class protein binding activity

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_088959.1 Reference assembly

    Range
    518146..518508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_447485.1 → XP_447485.1  transcription initiation factor IIA subunit gamma [Nakaseomyces glabratus]

    See identical proteins and their annotated locations for XP_447485.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0W0DN59, Q6FQK9
    Conserved Domains (1) summary
    COG5123
    Location:3 → 119
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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