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Tbc1d19 TBC1 domain family, member 19 [ Rattus norvegicus (Norway rat) ]

Gene ID: 289657, updated on 27-Nov-2024

Summary

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Official Symbol
Tbc1d19provided by RGD
Official Full Name
TBC1 domain family, member 19provided by RGD
Primary source
RGD:1304958
See related
EnsemblRapid:ENSRNOG00000003003 AllianceGenome:RGD:1304958
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1304958
Summary
Orthologous to human TBC1D19 (TBC1 domain family member 19). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 104.4), Brain (RPKM 94.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tbc1d19 in Genome Data Viewer
Location:
14q11
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (61297193..61413106, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (57084305..57200221, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (59403930..59516854, complement)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene cofilin 1, pseudogene 6 Neighboring gene stromal interaction molecule 2 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC102552214 Neighboring gene cholecystokinin A receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Functional dissection of Rab GTPases involved in primary cilium formation. Yoshimura S, et al. J Cell Biol, 2007 Jul 30. PMID 17646400, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
NOT involved_in regulation of cilium assembly ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
TBC1 domain family member 19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106008.2 → NP_001099478.1  TBC1 domain family member 19

    See identical proteins and their annotated locations for NP_001099478.1

    Status: PROVISIONAL

    Source sequence(s)
    BC166575
    UniProtKB/TrEMBL
    A0A8I5ZTK9, A6IJF4, B2GV89, F7FJU7
    Related
    ENSRNOP00000004030.5, ENSRNOT00000004030.8
    Conserved Domains (1) summary
    smart00164
    Location:248 → 466
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    61297193..61413106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063272928.1 → XP_063128998.1  TBC1 domain family member 19 isoform X1

    Related
    ENSRNOP00000081767.2, ENSRNOT00000108180.2

  2. XM_063272931.1 → XP_063129001.1  TBC1 domain family member 19 isoform X4

  3. XM_063272929.1 → XP_063128999.1  TBC1 domain family member 19 isoform X2

  4. XM_063272930.1 → XP_063129000.1  TBC1 domain family member 19 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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