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Nkapl NFKB activating protein-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 291165, updated on 27-Nov-2024

Summary

Official Symbol
Nkaplprovided by RGD
Official Full Name
NFKB activating protein-likeprovided by RGD
Primary source
RGD:1311667
See related
EnsemblRapid:ENSRNOG00000056708 AllianceGenome:RGD:1311667
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311667
Summary
Predicted to enable chromatin binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human NKAPL (NFKB activating protein like). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See Nkapl in Genome Data Viewer
Location:
17p11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (47830828..47832345)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (43135096..43136613)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (45175254..45176771)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 420, pseudogene 1 Neighboring gene uncharacterized LOC120097740 Neighboring gene zinc finger protein with KRAB and SCAN domains 4-like Neighboring gene zinc finger with KRAB and SCAN domains 4 Neighboring gene zinc finger and SCAN domain containing 26 Neighboring gene microRNA 1896 Neighboring gene uncharacterized LOC120097923 Neighboring gene piggyBac transposable element derived 1

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC114538

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001029913.1NP_001025084.1  NKAP-like protein

    See identical proteins and their annotated locations for NP_001025084.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097473
    UniProtKB/TrEMBL
    A6KN82, G3V9G8, Q4QR70
    Related
    ENSRNOP00000074151.1, ENSRNOT00000080417.3
    Conserved Domains (2) summary
    pfam06047
    Location:286387
    SynMuv_product; Ras-induced vulval development antagonizt
    pfam15692
    Location:110170
    NKAP; NF-kappa-B-activating protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    47830828..47832345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)