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Ttc33 tetratricopeptide repeat domain 33 [ Rattus norvegicus (Norway rat) ]

Gene ID: 294774, updated on 27-Nov-2024

Summary

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Official Symbol
Ttc33provided by RGD
Official Full Name
tetratricopeptide repeat domain 33provided by RGD
Primary source
RGD:1564042
See related
EnsemblRapid:ENSRNOG00000013217 AllianceGenome:RGD:1564042
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564042
Summary
Orthologous to human TTC33 (tetratricopeptide repeat domain 33). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 175.5), Muscle (RPKM 153.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ttc33 in Genome Data Viewer
Location:
2q16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (56007377..56054312)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (54279906..54326851)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (54897320..54944241)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 72 Neighboring gene ribosomal protein L37 Neighboring gene protein kinase AMP-activated catalytic subunit alpha 1 Neighboring gene small nuclear ribonucleoprotein polypeptide G, pseudogene 5 Neighboring gene uncharacterized LOC120100730 Neighboring gene prostaglandin E receptor 4 Neighboring gene uncharacterized LOC103691475

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
tetratricopeptide repeat protein 33

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106414.1 → NP_001099884.1  tetratricopeptide repeat protein 33

    See identical proteins and their annotated locations for NP_001099884.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474048
    UniProtKB/TrEMBL
    A0A8I6ANT7, A6KGE1
    Related
    ENSRNOP00000097937.2, ENSRNOT00000101780.2
    Conserved Domains (2) summary
    COG4783
    Location:71 → 164
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    sd00006
    Location:59 → 87
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    56007377..56054312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006231994.4 → XP_006232056.1  tetratricopeptide repeat protein 33 isoform X2

    See identical proteins and their annotated locations for XP_006232056.1

    UniProtKB/TrEMBL
    A0A8I6ANT7, A6KGE1
    Conserved Domains (2) summary
    COG4783
    Location:71 → 164
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    sd00006
    Location:59 → 87
    TPR; TPR repeat [structural motif]

  2. XM_006231993.5 → XP_006232055.3  tetratricopeptide repeat protein 33 isoform X1

    UniProtKB/TrEMBL
    D3ZBZ9
    Related
    ENSRNOP00000100652.1, ENSRNOT00000162683.1

  3. XM_063281519.1 → XP_063137589.1  tetratricopeptide repeat protein 33 isoform X2

    UniProtKB/TrEMBL
    A6KGE1

  4. XM_063281518.1 → XP_063137588.1  tetratricopeptide repeat protein 33 isoform X2

    UniProtKB/TrEMBL
    A6KGE1
Nucleotide Protein Strain
Heading Accession and Version

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