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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001111272.1 → NP_001104742.1 double-stranded RNA-binding protein Staufen homolog 2 isoform 2
See identical proteins and their annotated locations for NP_001104742.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate segment in the 5' end, compared to variant 1. This difference causes translation initiation at an upstream AUG and a protein (isoform 2) with a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AK031102, BI987531, BY290411, CN665159
- Consensus CDS
-
CCDS48223.1
- UniProtKB/TrEMBL
-
E2QRQ3
- Related
- ENSMUSP00000027052.7, ENSMUST00000027052.13
- Conserved Domains (5) summary
-
- pfam16482
Location:433 → 491
- Staufen_C; Staufen C-terminal domain
- cd19882
Location:66 → 147
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:174 → 240
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:272 → 357
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cl00054
Location:6 → 38
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
NM_001347044.1 → NP_001333973.1 double-stranded RNA-binding protein Staufen homolog 2 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC115952, AC116695, AC162448
- Consensus CDS
-
CCDS83528.1
- UniProtKB/TrEMBL
- D3Z6D2, E2QRQ3
- Related
- ENSMUSP00000122410.3, ENSMUST00000128957.9
-
NM_001347045.1 → NP_001333974.1 double-stranded RNA-binding protein Staufen homolog 2 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC115952, AC116695, AC162448
- Consensus CDS
-
CCDS83529.1
- UniProtKB/TrEMBL
-
E2QRQ3
- Related
- ENSMUSP00000124303.2, ENSMUST00000162007.8
- Conserved Domains (5) summary
-
- pfam16482
Location:433 → 479
- Staufen_C; Staufen C-terminal domain
- cd19882
Location:66 → 147
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:174 → 240
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:272 → 357
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cl00054
Location:6 → 38
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
NM_025303.3 → NP_079579.2 double-stranded RNA-binding protein Staufen homolog 2 isoform 3
See identical proteins and their annotated locations for NP_079579.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has multiple differences in the presence and absence of exons, compared to variant 1. These differences produce a unique 5' UTR and cause translation initiation at a downstream start codon, compared to variant 1. The encoded protein (isoform 3) is shorter than isoform 1.
- Source sequence(s)
-
AC115952, AC116695, AC162448, AC167117
- Consensus CDS
-
CCDS14831.2
- UniProtKB/Swiss-Prot
- Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
- UniProtKB/TrEMBL
-
E2QRQ3
- Related
- ENSMUSP00000124505.2, ENSMUST00000162751.8
- Conserved Domains (5) summary
-
- pfam16482
Location:465 → 523
- Staufen_C; Staufen C-terminal domain
- cd19880
Location:3 → 70
- DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19882
Location:98 → 179
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:206 → 272
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:304 → 389
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000067.7 Reference GRCm39 C57BL/6J
- Range
-
16299027..16591228 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006495532.5 → XP_006495595.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X3
See identical proteins and their annotated locations for XP_006495595.1
- UniProtKB/TrEMBL
-
E2QRQ3
- Related
- ENSMUSP00000123827.2, ENSMUST00000162435.8
- Conserved Domains (5) summary
-
- pfam16482
Location:433 → 491
- Staufen_C; Staufen C-terminal domain
- cd19882
Location:66 → 147
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:174 → 240
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:272 → 357
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cl00054
Location:6 → 38
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_006495528.5 → XP_006495591.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X1
See identical proteins and their annotated locations for XP_006495591.1
- UniProtKB/Swiss-Prot
- Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:465 → 523
- Staufen_C; Staufen C-terminal domain
- cd19880
Location:3 → 70
- DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19882
Location:98 → 179
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:206 → 272
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:304 → 389
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
-
XM_011238390.3 → XP_011236692.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X4
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:465 → 511
- Staufen_C; Staufen C-terminal domain
- cd19880
Location:3 → 70
- DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19882
Location:98 → 179
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:206 → 272
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:304 → 389
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
-
XM_017321109.3 → XP_017176598.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X5
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:433 → 479
- Staufen_C; Staufen C-terminal domain
- cd19882
Location:66 → 147
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:174 → 240
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:272 → 357
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cl00054
Location:6 → 38
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_017321102.3 → XP_017176591.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X1
- UniProtKB/Swiss-Prot
- Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:465 → 523
- Staufen_C; Staufen C-terminal domain
- cd19880
Location:3 → 70
- DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19882
Location:98 → 179
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:206 → 272
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:304 → 389
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
-
XM_011238387.2 → XP_011236689.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X1
See identical proteins and their annotated locations for XP_011236689.1
- UniProtKB/Swiss-Prot
- Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:465 → 523
- Staufen_C; Staufen C-terminal domain
- cd19880
Location:3 → 70
- DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19882
Location:98 → 179
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:206 → 272
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:304 → 389
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
-
XM_036165647.1 → XP_036021540.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X3
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:433 → 491
- Staufen_C; Staufen C-terminal domain
- cd19882
Location:66 → 147
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:174 → 240
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:272 → 357
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cl00054
Location:6 → 38
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_036165648.1 → XP_036021541.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X3
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:433 → 491
- Staufen_C; Staufen C-terminal domain
- cd19882
Location:66 → 147
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:174 → 240
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:272 → 357
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cl00054
Location:6 → 38
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_011238389.3 → XP_011236691.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X3
See identical proteins and their annotated locations for XP_011236691.1
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:433 → 491
- Staufen_C; Staufen C-terminal domain
- cd19882
Location:66 → 147
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:174 → 240
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:272 → 357
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cl00054
Location:6 → 38
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_030254814.2 → XP_030110674.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X1
- UniProtKB/Swiss-Prot
- Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:465 → 523
- Staufen_C; Staufen C-terminal domain
- cd19880
Location:3 → 70
- DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19882
Location:98 → 179
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:206 → 272
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:304 → 389
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
-
XM_011238388.3 → XP_011236690.1 double-stranded RNA-binding protein Staufen homolog 2 isoform X2
- UniProtKB/TrEMBL
-
E2QRQ3
- Conserved Domains (5) summary
-
- pfam16482
Location:465 → 512
- Staufen_C; Staufen C-terminal domain
- cd19880
Location:3 → 70
- DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19882
Location:98 → 179
- DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19884
Location:206 → 272
- DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
- cd19886
Location:304 → 389
- DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins