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Ttc27 tetratricopeptide repeat domain 27 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298782, updated on 27-Nov-2024

Summary

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Official Symbol
Ttc27provided by RGD
Official Full Name
tetratricopeptide repeat domain 27provided by RGD
Primary source
RGD:1305264
See related
EnsemblRapid:ENSRNOG00000033090 AllianceGenome:RGD:1305264
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305264
Summary
Orthologous to human TTC27 (tetratricopeptide repeat domain 27). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 121.0), Thymus (RPKM 96.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ttc27 in Genome Data Viewer
Location:
6q13
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (26310696..26454045, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (20558756..20702126, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (21735833..21880008, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S18 pseudogene Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC108351178 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134479327 Neighboring gene baculoviral IAP repeat-containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
tetratricopeptide repeat protein 27

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106706.1 → NP_001100176.1  tetratricopeptide repeat protein 27

    See identical proteins and their annotated locations for NP_001100176.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473947
    UniProtKB/TrEMBL
    A0A8I6ANW3, A6H9X5, D3ZTG2
    Related
    ENSRNOP00000094996.1, ENSRNOT00000116986.2
    Conserved Domains (2) summary
    sd00006
    Location:531 → 559
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:567 → 629
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    26310696..26454045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006239754.5 → XP_006239816.1  tetratricopeptide repeat protein 27 isoform X1

    UniProtKB/TrEMBL
    A0A8I6ANW3
    Conserved Domains (2) summary
    sd00006
    Location:531 → 559
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:567 → 629
    TPR_11; TPR repeat
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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