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RGD1311745 similar to RIKEN cDNA 1110059G10 [ Rattus norvegicus (Norway rat) ]

Gene ID: 301079, updated on 4-Jan-2025

Summary

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Official Symbol
RGD1311745provided by RGD
Official Full Name
similar to RIKEN cDNA 1110059G10provided by RGD
Primary source
RGD:1311745
See related
EnsemblRapid:ENSRNOG00000004135 AllianceGenome:RGD:1311745
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human KIAA1143 (KIAA1143). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 117.1), Thymus (RPKM 94.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RGD1311745 in Genome Data Viewer
Location:
8q32
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (131475903..131486619, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (122598363..122609127, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (132029618..132032971, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1, pseudogene 36 Neighboring gene ribosomal protein L7, pseudogene 3 Neighboring gene kinesin family member 15 Neighboring gene transmembrane protein 42 Neighboring gene transglutaminase 4 Neighboring gene zinc finger DHHC-type palmitoyltransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC94788

General protein information

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Preferred Names
uncharacterized protein KIAA1143 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008329.1 → NP_001008330.1  uncharacterized protein KIAA1143 homolog

    See identical proteins and their annotated locations for NP_001008330.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085913
    UniProtKB/Swiss-Prot
    Q5RKH3
    UniProtKB/TrEMBL
    A6I494
    Conserved Domains (1) summary
    pfam15377
    Location:5 → 151
    DUF4604; Domain of unknown function (DUF4604)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    131475903..131486619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039081310.2 → XP_038937238.1  uncharacterized protein KIAA1143 homolog isoform X2

    UniProtKB/TrEMBL
    A0A0G2K0E2
    Related
    ENSRNOP00000071409.1, ENSRNOT00000087493.3
    Conserved Domains (1) summary
    pfam15377
    Location:32 → 139
    DUF4604; Domain of unknown function (DUF4604)

  2. XM_063265310.1 → XP_063121380.1  uncharacterized protein KIAA1143 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q233

  3. XM_063265311.1 → XP_063121381.1  uncharacterized protein KIAA1143 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q233

  4. XM_063265309.1 → XP_063121379.1  uncharacterized protein KIAA1143 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8L2Q233
    Related
    ENSRNOP00000005502.4, ENSRNOT00000005502.8
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5RKH3.1 GenPept UniProtKB/Swiss-Prot:Q5RKH3

Gene LinkOut

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