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Glod5 glyoxalase domain containing 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 302554, updated on 4-Jan-2025

Summary

Official Symbol
Glod5provided by RGD
Official Full Name
glyoxalase domain containing 5provided by RGD
Primary source
RGD:1564596
See related
EnsemblRapid:ENSRNOG00000039571 AllianceGenome:RGD:1564596
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564596
Summary
Orthologous to human GLOD5 (glyoxalase domain containing 5). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Kidney (RPKM 292.3), Spleen (RPKM 23.3) and 3 other tissues See more
Orthologs
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Genomic context

See Glod5 in Genome Data Viewer
Location:
Xq12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (17145936..17160733)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (14473994..14488797)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (15225645..15240458)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene WASP actin nucleation promoting factor Neighboring gene SUV39H1 histone lysine methyltransferase Neighboring gene Annexin A7, pseudogene 3 Neighboring gene uncharacterized LOC102554502 Neighboring gene GATA binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
glyoxalase domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106957.1NP_001100427.1  glyoxalase domain-containing protein 5

    See identical proteins and their annotated locations for NP_001100427.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474078
    UniProtKB/TrEMBL
    A6KP59, D3Z9B0
    Conserved Domains (1) summary
    cd07253
    Location:23145
    Glo_EDI_BRP_like_2; This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    17145936..17160733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039099630.2XP_038955558.1  glyoxalase domain-containing protein 5 isoform X1

    Related
    ENSRNOP00000101718.1, ENSRNOT00000161800.1
    Conserved Domains (1) summary
    cd07253
    Location:22144
    GLOD5; Human glyoxalase domain-containing protein 5 and similar proteins
  2. XM_006256706.4XP_006256768.2  glyoxalase domain-containing protein 5 isoform X2

    Conserved Domains (1) summary
    cd07253
    Location:38127
    GLOD5; Human glyoxalase domain-containing protein 5 and similar proteins