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Odr4 odr-4 GPCR localization factor homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 304863, updated on 27-Nov-2024

Summary

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Official Symbol
Odr4provided by RGD
Official Full Name
odr-4 GPCR localization factor homologprovided by RGD
Primary source
RGD:1307830
See related
EnsemblRapid:ENSRNOG00000002473 AllianceGenome:RGD:1307830
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307830
Summary
Predicted to be involved in protein localization. Predicted to be located in membrane. Orthologous to human ODR4 (odr-4 GPCR localization factor homolog). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 131.7), Adrenal (RPKM 111.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Odr4 in Genome Data Viewer
Location:
13q21
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (64925573..64974395, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (62369109..62424287, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (67578904..67611605, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene monooxygenase like, pseudogene 1 Neighboring gene uncharacterized LOC134481514 Neighboring gene uncharacterized LOC134481513 Neighboring gene phosducin Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene proteoglycan 4 Neighboring gene hemicentin 1 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in protein localization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein odr-4 homolog
NP_001414631.1
XP_038947274.1
XP_038947276.1
XP_038947278.1
XP_038947279.1
XP_038947281.1
XP_063128391.1
XP_063128392.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427702.1 → NP_001414631.1  protein odr-4 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000013
    UniProtKB/TrEMBL
    A0A8I6AVP7
    Related
    ENSRNOP00000096870.1, ENSRNOT00000113373.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    64925573..64974395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063272321.1 → XP_063128391.1  protein odr-4 homolog isoform X4

    Related
    ENSRNOP00000056732.4, ENSRNOT00000059984.7

  2. XM_039091351.2 → XP_038947279.1  protein odr-4 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8I6A685
    Conserved Domains (1) summary
    pfam14778
    Location:28 → 379
    ODR4-like; Olfactory receptor 4-like

  3. XM_039091346.2 → XP_038947274.1  protein odr-4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6A685, A0A8I6AVP7
    Conserved Domains (1) summary
    pfam14778
    Location:28 → 379
    ODR4-like; Olfactory receptor 4-like

  4. XM_039091353.2 → XP_038947281.1  protein odr-4 homolog isoform X6

    UniProtKB/TrEMBL
    A6ICR3
    Conserved Domains (1) summary
    pfam14778
    Location:1 → 298
    ODR4-like; Olfactory receptor 4-like

  5. XM_039091350.1 → XP_038947278.1  protein odr-4 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8I6A685, D3ZV63
    Related
    ENSRNOP00000104850.1, ENSRNOT00000146239.1
    Conserved Domains (1) summary
    pfam14778
    Location:5 → 349
    ODR4-like; Olfactory receptor 4-like

  6. XM_039091348.2 → XP_038947276.1  protein odr-4 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8I6A685
    Conserved Domains (1) summary
    pfam14778
    Location:28 → 379
    ODR4-like; Olfactory receptor 4-like

  7. XM_063272322.1 → XP_063128392.1  protein odr-4 homolog isoform X5

RNA

  1. XR_005492531.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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