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Cage1 cancer antigen 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 306872, updated on 4-Jan-2025

Summary

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Official Symbol
Cage1provided by RGD
Official Full Name
cancer antigen 1provided by RGD
Primary source
RGD:1306102
See related
EnsemblRapid:ENSRNOG00000024111 AllianceGenome:RGD:1306102
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ctag3
Summary
Orthologous to human CAGE1 (cancer antigen 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Restricted expression toward (RPKM 1101.8) See more
Orthologs
human mouse all
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Genomic context

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See Cage1 in Genome Data Viewer
Location:
17p12
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (26995671..27033740)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (26789975..26828210)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (27452506..27490853)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546383 Neighboring gene RIO kinase 1 Neighboring gene uncharacterized LOC120097850 Neighboring gene signal sequence receptor subunit 1 Neighboring gene uncharacterized LOC134482845 Neighboring gene ras responsive element binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cancer-associated gene 1 protein homolog
Names
CAGE-1
CT3 homolog
cancer/testis antigen 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012052.1 → NP_001012052.1  cancer-associated gene 1 protein homolog

    See identical proteins and their annotated locations for NP_001012052.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081934
    UniProtKB/Swiss-Prot
    Q66HB6
    UniProtKB/TrEMBL
    A6J7B4
    Related
    ENSRNOP00000101637.1, ENSRNOT00000123244.1
    Conserved Domains (3) summary
    COG1196
    Location:311 → 825
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15066
    Location:1 → 524
    CAGE1; Cancer-associated gene protein 1 family
    cl23943
    Location:447 → 527
    PCRF; PCRF domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    26995671..27033740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006253808.5 → XP_006253870.1  cancer-associated gene 1 protein homolog isoform X1

    See identical proteins and their annotated locations for XP_006253870.1

    UniProtKB/Swiss-Prot
    Q66HB6
    UniProtKB/TrEMBL
    A6J7B4
    Conserved Domains (3) summary
    COG1196
    Location:311 → 825
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15066
    Location:1 → 524
    CAGE1; Cancer-associated gene protein 1 family
    cl23943
    Location:447 → 527
    PCRF; PCRF domain

  2. XM_006253811.4 → XP_006253873.1  cancer-associated gene 1 protein homolog isoform X3

    See identical proteins and their annotated locations for XP_006253873.1

    UniProtKB/TrEMBL
    A0A8I5Y609
    Conserved Domains (2) summary
    pfam15066
    Location:1 → 524
    CAGE1; Cancer-associated gene protein 1 family
    cl23943
    Location:447 → 527
    PCRF; PCRF domain

  3. XM_006253810.5 → XP_006253872.1  cancer-associated gene 1 protein homolog isoform X3

    See identical proteins and their annotated locations for XP_006253872.1

    UniProtKB/TrEMBL
    A0A8I5Y609
    Related
    ENSRNOP00000077581.1, ENSRNOT00000111272.2
    Conserved Domains (2) summary
    pfam15066
    Location:1 → 524
    CAGE1; Cancer-associated gene protein 1 family
    cl23943
    Location:447 → 527
    PCRF; PCRF domain

  4. XM_006253809.5 → XP_006253871.1  cancer-associated gene 1 protein homolog isoform X2

    Related
    ENSRNOP00000101472.1, ENSRNOT00000169184.1
    Conserved Domains (3) summary
    COG1196
    Location:263 → 777
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15066
    Location:3 → 476
    CAGE1; Cancer-associated gene protein 1 family
    cl23943
    Location:399 → 479
    PCRF; PCRF domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66HB6.1 GenPept UniProtKB/Swiss-Prot:Q66HB6

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