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Rbfa ribosome binding factor A [ Rattus norvegicus (Norway rat) ]

Gene ID: 307235, updated on 4-Jan-2025

Summary

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Official Symbol
Rbfaprovided by RGD
Official Full Name
ribosome binding factor Aprovided by RGD
Primary source
RGD:1311910
See related
EnsemblRapid:ENSRNOG00000055647 AllianceGenome:RGD:1311910
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311910
Summary
Predicted to be involved in rRNA processing. Predicted to be located in mitochondrion. Orthologous to human RBFA (ribosome binding factor A). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Heart (RPKM 200.7), Liver (RPKM 156.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Rbfa in Genome Data Viewer
Location:
18q12.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (75914247..75923893, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (73639264..73648914, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (76704223..76714387, complement)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134483064 Neighboring gene uncharacterized LOC108348824 Neighboring gene 60S acidic ribosomal protein P0 pseudogene Neighboring gene thioredoxin-like 4A Neighboring gene N(alpha)-acetyltransferase 12, NatA catalytic subunit Neighboring gene heat shock factor binding protein 1-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 PubMed 

General protein information

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Preferred Names
putative ribosome-binding factor A, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398654.1 → NP_001385583.1  putative ribosome-binding factor A, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000018
    UniProtKB/TrEMBL
    A0A0G2K1B0, A6K5G3
    Related
    ENSRNOP00000071769.2, ENSRNOT00000090319.3
    Conserved Domains (1) summary
    pfam02033
    Location:94 → 198
    RBFA; Ribosome-binding factor A

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    75914247..75923893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001107373.1: Suppressed sequence

    Description
    NM_001107373.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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