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Pcnx2 pecanex 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 307949, updated on 9-Dec-2024

Summary

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Official Symbol
Pcnx2provided by RGD
Official Full Name
pecanex 2provided by RGD
Primary source
RGD:1305883
See related
EnsemblRapid:ENSRNOG00000028580 AllianceGenome:RGD:1305883
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Pcnxl2; RGD1305883
Summary
Predicted to be located in membrane. Orthologous to human PCNX2 (pecanex 2). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Brain (RPKM 48.5), Lung (RPKM 9.1) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Pcnx2 in Genome Data Viewer
Location:
19q12
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (70616240..70766869, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (53718920..53869559, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (58583000..58736069, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 10 Neighboring gene nucleoside-triphosphatase, cancer-related Neighboring gene involucrin-like Neighboring gene uncharacterized LOC120098634 Neighboring gene mitogen-activated protein kinase kinase kinase 21 Neighboring gene potassium two pore domain channel subfamily K member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pecanex-like protein 2
Names
pecanex 1
pecanex homolog 2
pecanex-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427189.1 → NP_001414118.1  pecanex-like protein 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    UniProtKB/TrEMBL
    D4AB99
    Related
    ENSRNOP00000038464.8, ENSRNOT00000030077.9

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    70616240..70766869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063278079.1 → XP_063134149.1  pecanex-like protein 2 isoform X1

    UniProtKB/TrEMBL
    D4AB99

  2. XM_063278080.1 → XP_063134150.1  pecanex-like protein 2 isoform X2

  3. XM_063278083.1 → XP_063134153.1  pecanex-like protein 2 isoform X6

    UniProtKB/TrEMBL
    A6KJ41

  4. XM_063278081.1 → XP_063134151.1  pecanex-like protein 2 isoform X3

  5. XM_063278082.1 → XP_063134152.1  pecanex-like protein 2 isoform X4

  6. XM_039098293.2 → XP_038954221.1  pecanex-like protein 2 isoform X5

    Conserved Domains (1) summary
    PHA03307
    Location:336 → 646
    PHA03307; transcriptional regulator ICP4; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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