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Zswim9 zinc finger SWIM-type containing 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 308381, updated on 27-Nov-2024

Summary

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Official Symbol
Zswim9provided by RGD
Official Full Name
zinc finger SWIM-type containing 9provided by RGD
Primary source
RGD:1310257
See related
EnsemblRapid:ENSRNOG00000014186 AllianceGenome:RGD:1310257
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310257
Summary
Predicted to enable zinc ion binding activity. Predicted to act upstream of or within hematopoietic progenitor cell differentiation. Orthologous to human ZSWIM9 (zinc finger SWIM-type containing 9). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 19.4), Thymus (RPKM 17.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zswim9 in Genome Data Viewer
Location:
1q21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (83222133..83243116, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (74144818..74165804, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (75335183..75356130, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 61 Neighboring gene uncharacterized LOC134485101 Neighboring gene vomeronasal 1 receptor 62 Neighboring gene DNA ligase 1 Neighboring gene phospholipase A2 group IVC Neighboring gene pellino 1, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Haploinsufficiency of SAMD9L, an endosome fusion facilitator, causes myeloid malignancies in mice mimicking human diseases with monosomy 7. Nagamachi A, et al. Cancer Cell, 2013 Sep 9. PMID 24029230

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within hematopoietic progenitor cell differentiation ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC308381; uncharacterized protein ZSWIM9
Names
uncharacterized protein C19orf68 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432222.1 → NP_001419151.1  uncharacterized protein LOC308381 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I5ZUL5

  2. NM_001432223.1 → NP_001419152.1  uncharacterized protein LOC308381 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I5ZUL5

  3. NM_001432224.1 → NP_001419153.1  uncharacterized protein LOC308381 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I5ZUL5

  4. NM_001432225.1 → NP_001419154.1  uncharacterized protein LOC308381 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I5ZUL5

  5. NM_001432226.1 → NP_001419155.1  uncharacterized protein LOC308381 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  6. NM_001432227.1 → NP_001419156.1  uncharacterized protein LOC308381 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    83222133..83243116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006228322.3 → XP_006228384.1  uncharacterized protein ZSWIM9 isoform X1

    See identical proteins and their annotated locations for XP_006228384.1

    UniProtKB/TrEMBL
    D3ZHE3
    Conserved Domains (1) summary
    cl00458
    Location:787 → 877
    Peptidase_A8; Signal peptidase (SPase) II

  2. XM_006228323.4 → XP_006228385.1  uncharacterized protein ZSWIM9 isoform X2

    Conserved Domains (1) summary
    cl00458
    Location:755 → 845
    Peptidase_A8; Signal peptidase (SPase) II

  3. XM_006228324.4 → XP_006228386.1  uncharacterized protein ZSWIM9 isoform X2

    Related
    ENSRNOP00000018989.7, ENSRNOT00000018989.8
    Conserved Domains (1) summary
    cl00458
    Location:755 → 845
    Peptidase_A8; Signal peptidase (SPase) II

  4. XM_006228325.4 → XP_006228387.1  uncharacterized protein ZSWIM9 isoform X2

    Conserved Domains (1) summary
    cl00458
    Location:755 → 845
    Peptidase_A8; Signal peptidase (SPase) II

  5. XM_017589984.3 → XP_017445473.1  uncharacterized protein ZSWIM9 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZUL5

  6. XM_039100811.1 → XP_038956739.1  uncharacterized protein ZSWIM9 isoform X3

    UniProtKB/TrEMBL
    A6KSL8
    Conserved Domains (1) summary
    pfam17738
    Location:1 → 114
    DUF5575; Family of unknown function (DUF5575)

  7. XM_039100810.2 → XP_038956738.1  uncharacterized protein ZSWIM9 isoform X3

    UniProtKB/TrEMBL
    A6KSL8
    Conserved Domains (1) summary
    pfam17738
    Location:1 → 114
    DUF5575; Family of unknown function (DUF5575)
Nucleotide Protein Strain
Heading Accession and Version

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