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Zfp84 zinc finger protein 84 [ Rattus norvegicus (Norway rat) ]

Gene ID: 308482, updated on 4-Jan-2025

Summary

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Official Symbol
Zfp84provided by RGD
Official Full Name
zinc finger protein 84provided by RGD
Primary source
RGD:1309815
See related
EnsemblRapid:ENSRNOG00000029043 EnsemblRapid:ENSRNOG00000055519 AllianceGenome:RGD:1309815
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf30; Zfp790; AABR07002868.1
Summary
Predicted to enable metal ion binding activity. Orthologous to several human genes including ZFP30 (ZFP30 zinc finger protein). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Thymus (RPKM 60.8), Spleen (RPKM 54.9) and 9 other tissues See more
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Genomic context

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See Zfp84 in Genome Data Viewer
Location:
1q21
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (94114782..94144057)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (84987352..85015478)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (87647051..87662033)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485107 Neighboring gene ubiquitin-conjugating enzyme E2N, pseudogene 3 Neighboring gene zinc finger protein 420-like Neighboring gene ribosomal protein L4, pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 570
Names
ZFP30 zinc finger protein
zinc finger protein 30
zinc finger protein 790

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107500.3 → NP_001100970.1  zinc finger protein 570

    See identical proteins and their annotated locations for NP_001100970.1

    Status: VALIDATED

    Source sequence(s)
    FQ196558, JAXUCZ010000001
    UniProtKB/TrEMBL
    A6J9R4, D3ZD53
    Related
    ENSRNOP00000029398.7, ENSRNOT00000035994.8
    Conserved Domains (5) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box
    COG5048
    Location:243 → 559
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:447 → 467
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:515 → 540
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    94114782..94144057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039111585.2 → XP_038967513.1  zinc finger protein 570 isoform X3

    Conserved Domains (3) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box
    COG5048
    Location:243 → 607
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:447 → 467
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_006228698.4 → XP_006228760.1  zinc finger protein 570 isoform X1

    See identical proteins and their annotated locations for XP_006228760.1

    UniProtKB/TrEMBL
    A0A0G2K1C5, A6J9R5
    Related
    ENSRNOP00000071787.2, ENSRNOT00000088772.3
    Conserved Domains (5) summary
    smart00349
    Location:21 → 82
    KRAB; krueppel associated box
    COG5048
    Location:185 → 548
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:21 → 60
    KRAB; KRAB box
    pfam13465
    Location:202 → 226
    zf-H2C2_2; Zinc-finger double domain

  3. XM_039111584.2 → XP_038967512.1  zinc finger protein 570 isoform X2

    Conserved Domains (3) summary
    smart00349
    Location:21 → 81
    KRAB; krueppel associated box
    COG5048
    Location:184 → 547
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:468 → 488
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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