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Fv1 Friend virus susceptibility 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 308568, updated on 4-Jan-2025

Summary

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Official Symbol
Fv1provided by RGD
Official Full Name
Friend virus susceptibility 1provided by RGD
Primary source
RGD:1309326
See related
EnsemblRapid:ENSRNOG00000019132 AllianceGenome:RGD:1309326
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309326
Summary
Predicted to be involved in response to virus. Predicted to be active in Golgi apparatus. Orthologous to human C19orf48P (chromosome 19 open reading frame 48, pseudogene). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 138.2), Brain (RPKM 133.6) and 9 other tissues See more
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Genomic context

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See Fv1 in Genome Data Viewer
Location:
1q22
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (103867358..103873336)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (94730839..94736791)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (100220789..100226725)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700028J19 gene like Neighboring gene kallikrein 1-related peptidase B3 Neighboring gene uncharacterized LOC102552485 Neighboring gene small nucleolar RNA, C/D box 88C Neighboring gene small nucleolar RNA SNORD88 Neighboring gene small nucleolar RNA, C/D box 88A Neighboring gene small nucleolar RNA, C/D box 88B Neighboring gene acid phosphatase 4 Neighboring gene formyl peptide receptor-related sequence 4 Neighboring gene small integral membrane protein 47

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in response to virus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein C19orf48 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014018.2 → NP_001014040.2  uncharacterized protein C19orf48 homolog

    See identical proteins and their annotated locations for NP_001014040.2

    Status: VALIDATED

    Source sequence(s)
    AI574762, BC060592, FM122595
    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    103867358..103873336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039111845.2 → XP_038967773.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  2. XM_008759364.4 → XP_008757586.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_008757586.1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Related
    ENSRNOP00000025846.3, ENSRNOT00000025846.7
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  3. XM_008759365.4 → XP_008757587.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_008757587.1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  4. XM_063261881.1 → XP_063117951.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  5. XM_017589137.3 → XP_017444626.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  6. XM_008759362.4 → XP_008757584.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_008757584.1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  7. XM_063261790.1 → XP_063117860.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  8. XM_063261803.1 → XP_063117873.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  9. XM_039111828.2 → XP_038967756.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Related
    ENSRNOP00000078871.1, ENSRNOT00000107597.2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  10. XM_063261845.1 → XP_063117915.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  11. XM_063261792.1 → XP_063117862.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  12. XM_039111864.2 → XP_038967792.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  13. XM_039111839.2 → XP_038967767.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  14. XM_063261851.1 → XP_063117921.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  15. XM_017589136.3 → XP_017444625.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Related
    ENSRNOP00000080059.1, ENSRNOT00000096151.2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  16. XM_008759361.4 → XP_008757583.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_008757583.1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  17. XM_063261795.1 → XP_063117865.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  18. XM_063261812.1 → XP_063117882.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Related
    ENSRNOP00000078714.1, ENSRNOT00000101817.2

  19. XM_063261860.1 → XP_063117930.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  20. XM_063261863.1 → XP_063117933.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  21. XM_008759354.4 → XP_008757576.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_008757576.1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  22. XM_063261821.1 → XP_063117891.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  23. XM_008759363.4 → XP_008757585.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_008757585.1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  24. XM_008759360.4 → XP_008757582.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_008757582.1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Related
    ENSRNOP00000076648.1, ENSRNOT00000106002.2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  25. XM_017589135.3 → XP_017444624.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  26. XM_008759355.4 → XP_008757577.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_008757577.1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  27. XM_063261876.1 → XP_063117946.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2

  28. XM_017589134.3 → XP_017444623.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    F1LMA5, Q6P9U2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)
Nucleotide Protein Strain
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