C1h10orf88 similar to human chromosome 10 open reading frame 88 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: C1h10orf88provided by RGD
Official Full Name: similar to human chromosome 10 open reading frame 88provided by RGD
Primary source: RGD:1305014
See related: EnsemblRapid:ENSRNOG00000020597 AllianceGenome:RGD:1305014
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: PAAT; RGD1305014
Summary: Predicted to enable ATP hydrolysis activity and identical protein binding activity. Predicted to be located in mitochondrion. Orthologous to several human genes including C10orf88 (chromosome 10 open reading frame 88). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Brain (RPKM 31.0), Thymus (RPKM 29.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q41

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (195555517..195580177, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (186132360..186149932, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (201924779..201943014, complement)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

RH142026 (e-PCR)
- UniSTS:224017

AI429544 (e-PCR)
- UniSTS:165562

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	ISO Inferred from Sequence Orthology more info
enables ATP hydrolysis activity	ISS Inferred from Sequence or Structural Similarity more info
enables ATP-dependent H2AZ histone chaperone activity	IEA Inferred from Electronic Annotation more info
enables ATP-dependent H3-H4 histone complex chaperone activity	IEA Inferred from Electronic Annotation more info
enables DNA clamp loader activity	IEA Inferred from Electronic Annotation more info
enables chromatin extrusion motor activity	IEA Inferred from Electronic Annotation more info
enables cohesin loader activity	IEA Inferred from Electronic Annotation more info
enables identical protein binding	IEA Inferred from Electronic Annotation more info
enables identical protein binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in chromatin looping	IEA Inferred from Electronic Annotation more info
involved_in chromatin remodeling	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: ATPase PAAT

Names: protein associated with ABC transporters; uncharacterized protein C10orf88 homolog

NP_001014047.1

EC 3.6.1.3

XP_008758107.1

EC 3.6.1.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001014025.1 → NP_001014047.1 ATPase PAAT

See identical proteins and their annotated locations for NP_001014047.1

Status: PROVISIONAL

Source sequence(s)

BC083846

UniProtKB/Swiss-Prot

Q5XI46

UniProtKB/TrEMBL

A6HWV8

Related

ENSRNOP00000027956.4, ENSRNOT00000027956.8

Conserved Domains (1) summary

pfam14958
Location:59 → 197

DUF4506; Domain of unknown function (DUF4506)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

195555517..195580177 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_008759885.4 → XP_008758107.1 ATPase PAAT isoform X1

UniProtKB/TrEMBL

A0A8I5ZT74

Related

ENSRNOP00000081975.1, ENSRNOT00000096199.2

Conserved Domains (1) summary

pfam14958
Location:59 → 197

DUF4506; Domain of unknown function (DUF4506)