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Ttc9c tetratricopeptide repeat domain 9C [ Rattus norvegicus (Norway rat) ]

Gene ID: 309196, updated on 27-Nov-2024

Summary

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Official Symbol
Ttc9cprovided by RGD
Official Full Name
tetratricopeptide repeat domain 9Cprovided by RGD
Primary source
RGD:1359253
See related
EnsemblRapid:ENSRNOG00000019464 AllianceGenome:RGD:1359253
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1359253
Summary
Orthologous to human TTC9C (tetratricopeptide repeat domain 9C). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 173.6), Spleen (RPKM 144.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ttc9c in Genome Data Viewer
Location:
1q43
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (215130887..215142384, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (205701768..205712782, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (225003859..225014867, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene interferon-induced transmembrane protein 2-like Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene RNA polymerase II subunit G Neighboring gene zinc finger and BTB domain containing 3 Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 2 Neighboring gene BSCL2 lipid droplet biogenesis associated, seipin Neighboring gene G protein subunit gamma 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Na CH, et al. J Proteome Res, 2012 Sep 7. PMID 22871113, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC73022

General protein information

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Preferred Names
tetratricopeptide repeat protein 9C
Names
TPR domain containing protein RGD1359253
TPR repeat protein 9C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007693.2 → NP_001007694.1  tetratricopeptide repeat protein 9C

    See identical proteins and their annotated locations for NP_001007694.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/Swiss-Prot
    Q6P5P3
    UniProtKB/TrEMBL
    A0A8I6AP96, A6HZU8
    Related
    ENSRNOP00000096266.2, ENSRNOT00000095692.2
    Conserved Domains (2) summary
    TIGR02917
    Location:82 → 152
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    215130887..215142384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006230988.5 → XP_006231050.1  tetratricopeptide repeat protein 9C isoform X1

    See identical proteins and their annotated locations for XP_006231050.1

    UniProtKB/Swiss-Prot
    Q6P5P3
    UniProtKB/TrEMBL
    A0A8I6AP96, A6HZU8
    Conserved Domains (2) summary
    TIGR02917
    Location:82 → 152
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

  2. XM_006230987.5 → XP_006231049.1  tetratricopeptide repeat protein 9C isoform X1

    See identical proteins and their annotated locations for XP_006231049.1

    UniProtKB/Swiss-Prot
    Q6P5P3
    UniProtKB/TrEMBL
    A0A8I6AP96, A6HZU8
    Conserved Domains (2) summary
    TIGR02917
    Location:82 → 152
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

  3. XM_063264425.1 → XP_063120495.1  tetratricopeptide repeat protein 9C isoform X1

    UniProtKB/Swiss-Prot
    Q6P5P3
    UniProtKB/TrEMBL
    A6HZU8

  4. XM_063264427.1 → XP_063120497.1  tetratricopeptide repeat protein 9C isoform X1

    UniProtKB/Swiss-Prot
    Q6P5P3
    UniProtKB/TrEMBL
    A6HZU8

  5. XM_006230985.5 → XP_006231047.1  tetratricopeptide repeat protein 9C isoform X1

    See identical proteins and their annotated locations for XP_006231047.1

    UniProtKB/Swiss-Prot
    Q6P5P3
    UniProtKB/TrEMBL
    A0A8I6AP96, A6HZU8
    Conserved Domains (2) summary
    TIGR02917
    Location:82 → 152
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

  6. XM_063264424.1 → XP_063120494.1  tetratricopeptide repeat protein 9C isoform X1

    UniProtKB/Swiss-Prot
    Q6P5P3
    UniProtKB/TrEMBL
    A6HZU8
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6P5P3.1 GenPept UniProtKB/Swiss-Prot:Q6P5P3

Gene LinkOut

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