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CG3176 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 30990, updated on 9-Dec-2024

Summary

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Official Symbol
CG3176provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0029524
Locus tag
Dmel_CG3176
See related
AllianceGenome:FB:FBgn0029524
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RH59219; Dmel\CG3176
Summary
Predicted to enable CD27 receptor binding activity. Predicted to be involved in extrinsic apoptotic signaling pathway. Is expressed in several structures, including central brain primordium; ganglia; larval nervous system; lateral cord neurons; and ventral nerve cord primordium. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See CG3176 in Genome Data Viewer
Location:
1B4-1B4; 1-0 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (481862..482768)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (375895..376801)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45797 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A neurogenetic mechanism of experience-dependent suppression of aggression. Ishii K, et al. Sci Adv, 2022 Sep 9. PMID 36070378, Free PMC Article
  2. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
  3. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
  4. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
  5. Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes. López-Varea A, et al. G3 (Bethesda), 2021 Dec 8. PMID 34599810, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables CD27 receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in extrinsic apoptotic signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG3176-PA
CG3176-PB
CG3176-PC
CG3176-PD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    481862..482768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001272167.1 → NP_001259096.1  uncharacterized protein Dmel_CG3176, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259096.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PDE1, Q6NMY1

  2. NM_001272168.1 → NP_001259097.1  uncharacterized protein Dmel_CG3176, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259097.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PDE1, Q6NMY1

  3. NM_001297811.1 → NP_001284740.1  uncharacterized protein Dmel_CG3176, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001284740.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6NMY1, Q9I7Z9
    Conserved Domains (1) summary
    pfam05458
    Location:10 → 119
    Siva; Cd27 binding protein (Siva)

  4. NM_130486.4 → NP_569842.1  uncharacterized protein Dmel_CG3176, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_569842.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6NMY1, Q9I7Z9
    Related
    FBpp0070077
    Conserved Domains (1) summary
    pfam05458
    Location:10 → 119
    Siva; Cd27 binding protein (Siva)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PDE1 M9PDE1
Q9I7Z9 Q9I7Z9

Gene LinkOut

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