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Fam169a family with sequence similarity 169, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 310013, updated on 27-Nov-2024

Summary

Official Symbol
Fam169aprovided by RGD
Official Full Name
family with sequence similarity 169, member Aprovided by RGD
Primary source
RGD:1590893
See related
EnsemblRapid:ENSRNOG00000016505 AllianceGenome:RGD:1590893
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human FAM169A (family with sequence similarity 169 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 138.7), Testes (RPKM 58.8) and 4 other tissues See more
Orthologs
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Genomic context

See Fam169a in Genome Data Viewer
Location:
2q12
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (30115307..30175972)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (28384162..28441361)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (27884748..27941069)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485579 Neighboring gene uncharacterized LOC120100675 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 pseudogene Neighboring gene NSA2 ribosome biogenesis factor Neighboring gene GTP dependent ribosome recycling factor mitochondrial 2 Neighboring gene hexosaminidase subunit beta

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
soluble lamin-associated protein of 75 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427646.1NP_001414575.1  soluble lamin-associated protein of 75 kDa

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    30115307..30175972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063281717.1XP_063137787.1  soluble lamin-associated protein of 75 kDa isoform X2

  2. XM_039103472.2XP_038959400.1  soluble lamin-associated protein of 75 kDa isoform X2

    UniProtKB/TrEMBL
    D3ZKX8
  3. XM_006231831.5XP_006231893.1  soluble lamin-associated protein of 75 kDa isoform X1

    See identical proteins and their annotated locations for XP_006231893.1

    UniProtKB/TrEMBL
    A0A8I6G2A6, D3ZKX8
    Related
    ENSRNOP00000078762.1, ENSRNOT00000109459.2
  4. XM_039103474.2XP_038959402.1  soluble lamin-associated protein of 75 kDa isoform X3

    UniProtKB/TrEMBL
    A6I519