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mrpl9 mitochondrial ribosomal protein L9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 310653, updated on 27-Nov-2024

Summary

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Official Symbol
mrpl9provided by RGD
Official Full Name
mitochondrial ribosomal protein L9provided by RGD
Primary source
RGD:1359171
See related
EnsemblRapid:ENSRNOG00000020869 AllianceGenome:RGD:1359171
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPL9 (mitochondrial ribosomal protein L9). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 253.7), Thymus (RPKM 244.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See mrpl9 in Genome Data Viewer
Location:
2q34
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (184768837..184775787)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (182082012..182086758)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (195684750..195689470)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene tudor and KH domain containing Neighboring gene cytochrome c, somatic-like Neighboring gene ornithine decarboxylase antizyme 3 Neighboring gene uncharacterized LOC102556390 Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene CUGBP, Elav-like family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. Suzuki T, et al. J Biol Chem, 2001 Jun 15. PMID 11279069
  2. Structures of the human mitochondrial ribosome in native states of assembly. Brown A, et al. Nat Struct Mol Biol, 2017 Oct. PMID 28892042, Free PMC Article
  3. Structure of the large ribosomal subunit from human mitochondria. Brown A, et al. Science, 2014 Nov 7. PMID 25278503, Free PMC Article
  4. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
  5. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC95263

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of mitochondrial large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
  
part_of mitochondrial large ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein bL9m
Names
39S ribosomal protein L9, mitochondrial
L9mt
MRP-L9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007696.1 → NP_001007697.1  large ribosomal subunit protein bL9m

    See identical proteins and their annotated locations for NP_001007697.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082085
    UniProtKB/Swiss-Prot
    Q641X9
    UniProtKB/TrEMBL
    A0A8L2QGW3, A6K2R3
    Related
    ENSRNOP00000028316.6, ENSRNOT00000028316.7
    Conserved Domains (2) summary
    CHL00160
    Location:88 → 223
    rpl9; ribosomal protein L9; Provisional
    pfam01281
    Location:92 → 137
    Ribosomal_L9_N; Ribosomal protein L9, N-terminal domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    184768837..184775787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063281869.1 → XP_063137939.1  large ribosomal subunit protein bL9m isoform X1

    UniProtKB/TrEMBL
    A0A8I6AIX2

  2. XM_039102342.2 → XP_038958270.1  large ribosomal subunit protein bL9m isoform X2

    Conserved Domains (1) summary
    pfam01281
    Location:92 → 137
    Ribosomal_L9_N; Ribosomal protein L9, N-terminal domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q641X9.1 GenPept UniProtKB/Swiss-Prot:Q641X9

Gene LinkOut

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