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Fndc7 fibronectin type III domain containing 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 310787, updated on 4-Jan-2025

Summary

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Official Symbol
Fndc7provided by RGD
Official Full Name
fibronectin type III domain containing 7provided by RGD
Primary source
RGD:1309189
See related
EnsemblRapid:ENSRNOG00000020421 AllianceGenome:RGD:1309189
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309189
Summary
Orthologous to human FNDC7 (fibronectin type III domain containing 7). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Uterus (RPKM 23.1), Lung (RPKM 18.5) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fndc7 in Genome Data Viewer
Location:
2q34
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (199189029..199226425, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (196501313..196537816, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (211655482..211690802, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene AKNA domain containing 1 Neighboring gene uncharacterized LOC102547393 Neighboring gene syntaxin binding protein 3 Neighboring gene uncharacterized LOC134485674 Neighboring gene microRNA 6314 Neighboring gene pre-mRNA processing factor 38B Neighboring gene HEN methyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
fibronectin type III domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107717.2 → NP_001101187.1  fibronectin type III domain-containing protein 7 precursor

    See identical proteins and their annotated locations for NP_001101187.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    A0A8I6AG81, A6HV32, D3ZJV4
    Related
    ENSRNOP00000027690.5, ENSRNOT00000027690.7
    Conserved Domains (3) summary
    smart00060
    Location:115 → 188
    FN3; Fibronectin type 3 domain
    cd00063
    Location:201 → 285
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:28 → 105
    fn3; Fibronectin type III domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    199189029..199226425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006233159.5 → XP_006233221.1  fibronectin type III domain-containing protein 7 isoform X1

    See identical proteins and their annotated locations for XP_006233221.1

    UniProtKB/TrEMBL
    A0A8I6AG81, A6HV32, D3ZJV4
    Conserved Domains (3) summary
    smart00060
    Location:115 → 188
    FN3; Fibronectin type 3 domain
    cd00063
    Location:201 → 285
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:28 → 105
    fn3; Fibronectin type III domain
Nucleotide Protein Strain
Heading Accession and Version

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