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Tp53i11 tumor protein p53 inducible protein 11 [ Rattus norvegicus (Norway rat) ]

Gene ID: 311209, updated on 27-Nov-2024

Summary

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Official Symbol
Tp53i11provided by RGD
Official Full Name
tumor protein p53 inducible protein 11provided by RGD
Primary source
RGD:1308395
See related
EnsemblRapid:ENSRNOG00000008738 AllianceGenome:RGD:1308395
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Trp53i11
Summary
Predicted to be located in membrane. Orthologous to human TP53I11 (tumor protein p53 inducible protein 11). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 174.5), Thymus (RPKM 169.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tp53i11 in Genome Data Viewer
Location:
3q31
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (99600213..99615462)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (79144824..79160056)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (82081838..82097064)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene PR/SET domain 11 Neighboring gene uncharacterized LOC134486128 Neighboring gene ribosomal oxygenase 2, pseudogene 5 Neighboring gene tetraspanin 18 Neighboring gene uncharacterized LOC120101602

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tumor protein p53-inducible protein 11
Names
p53-induced gene 11 protein
transformation related protein 53 inducible protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107749.3 → NP_001101219.1  tumor protein p53-inducible protein 11

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/Swiss-Prot
    B3DMA0
    Conserved Domains (1) summary
    pfam14936
    Location:10 → 188
    p53-inducible11; tumor protein p53-inducible protein 11

  2. NM_001399493.2 → NP_001386422.1  tumor protein p53-inducible protein 11

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/Swiss-Prot
    B3DMA0
    Conserved Domains (1) summary
    pfam14936
    Location:10 → 188
    p53-inducible11; tumor protein p53-inducible protein 11

  3. NM_001399494.2 → NP_001386423.1  tumor protein p53-inducible protein 11

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/Swiss-Prot
    B3DMA0
    Conserved Domains (1) summary
    pfam14936
    Location:10 → 188
    p53-inducible11; tumor protein p53-inducible protein 11

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    99600213..99615462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006234571.5 → XP_006234633.1  tumor protein p53-inducible protein 11 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZW55
    Conserved Domains (1) summary
    pfam14936
    Location:18 → 196
    p53-inducible11; tumor protein p53-inducible protein 11

  2. XM_063283675.1 → XP_063139745.1  tumor protein p53-inducible protein 11 isoform X3

  3. XM_006234569.5 → XP_006234631.1  tumor protein p53-inducible protein 11 isoform X1

    UniProtKB/TrEMBL
    A0A8L2QSJ1, A6HNI4
    Related
    ENSRNOP00000053834.3, ENSRNOT00000057001.5
    Conserved Domains (1) summary
    pfam14936
    Location:25 → 203
    p53-inducible11; tumor protein p53-inducible protein 11
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B3DMA0.1 GenPept UniProtKB/Swiss-Prot:B3DMA0

Gene LinkOut

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