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C3h9orf50 similar to human chromosome 9 open reading frame 50 [ Rattus norvegicus (Norway rat) ]

Gene ID: 311852, updated on 4-Jan-2025

Summary

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Official Symbol
C3h9orf50provided by RGD
Official Full Name
similar to human chromosome 9 open reading frame 50provided by RGD
Primary source
RGD:1311084
See related
EnsemblRapid:ENSRNOG00000018486 AllianceGenome:RGD:1311084
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311084
Summary
Orthologous to human C9orf50 (chromosome 9 open reading frame 50). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 158.0) and Brain (RPKM 9.0) See more
Orthologs
human mouse all
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Genomic context

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See C3h9orf50 in Genome Data Viewer
Location:
3p12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (34477535..34484791, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (14076679..14087036, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (9629823..9636137, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120101517 Neighboring gene uncharacterized LOC102554501 Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase 1 Neighboring gene ankyrin repeat and SOCS box-containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C9orf50 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100979.1 → NP_001094449.1  uncharacterized protein C9orf50 homolog

    See identical proteins and their annotated locations for NP_001094449.1

    Status: PROVISIONAL

    Source sequence(s)
    BC127535
    UniProtKB/TrEMBL
    A0JPQ0
    Related
    ENSRNOP00000024953.4, ENSRNOT00000024953.6
    Conserved Domains (1) summary
    pfam15737
    Location:230 → 281
    DUF4685; Domain of unknown function (DUF4685)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    34477535..34484791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063283955.1 → XP_063140025.1  uncharacterized protein C9orf50 homolog isoform X2

  2. XM_063283954.1 → XP_063140024.1  uncharacterized protein C9orf50 homolog isoform X1

  3. XM_063283957.1 → XP_063140027.1  uncharacterized protein C9orf50 homolog isoform X5

  4. XM_006233914.5 → XP_006233976.1  uncharacterized protein C9orf50 homolog isoform X3

    See identical proteins and their annotated locations for XP_006233976.1

    UniProtKB/TrEMBL
    A0A8I6AGU8, A6JTZ7
    Related
    ENSRNOP00000092590.1, ENSRNOT00000097005.2
    Conserved Domains (1) summary
    pfam15737
    Location:194 → 245
    DUF4685; Domain of unknown function (DUF4685)

  5. XM_063283958.1 → XP_063140028.1  uncharacterized protein C9orf50 homolog isoform X8

  6. XM_063283956.1 → XP_063140026.1  uncharacterized protein C9orf50 homolog isoform X4

  7. XM_039105244.2 → XP_038961172.1  uncharacterized protein C9orf50 homolog isoform X7

  8. XM_039105243.2 → XP_038961171.1  uncharacterized protein C9orf50 homolog isoform X6

  9. XM_063283959.1 → XP_063140029.1  uncharacterized protein C9orf50 homolog isoform X9

RNA

  1. XR_005501914.2 RNA Sequence

  2. XR_005501916.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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