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PPL_12636 hypothetical protein [ Polysphondylium pallidum PN500 ]

Gene ID: 31368103, updated on 16-Nov-2023

Summary

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Gene symbol
PPL_12636
Gene description
hypothetical protein
Locus tag
PPL_12636
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Polysphondylium pallidum PN500 (strain: PN500)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium
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Genomic context

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See PPL_12636 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
6

NW_008805072.1Genomic Context describing neighboring genes Neighboring gene XPG Neighboring gene phospholipid methyltransferase family protein Neighboring gene hypothetical protein Neighboring gene putative fatty acid synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008805072.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication. Heidel AJ, et al. Genome Res, 2011 Nov. PMID 21757610, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_008805072.1 Reference assembly

    Range
    1610056..1614207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020583362.1 → XP_020429549.1  hypothetical protein PPL_12636 [Polysphondylium pallidum PN500]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D3BN58
    Conserved Domains (3) summary
    sd00039
    Location:830 → 868
    7WD40; WD40 repeat [structural motif]
    pfam12265
    Location:731 → 800
    CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
    cl25539
    Location:801 → 957
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version