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pks27 putative fatty acid synthase [ Polysphondylium pallidum PN500 ]

Gene ID: 31368105, updated on 16-Nov-2023

Summary

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Gene symbol
pks27
Gene description
putative fatty acid synthase
Locus tag
PPL_12638
Gene type
protein coding
RNA name
putative fatty acid synthase
RefSeq status
PROVISIONAL
Organism
Polysphondylium pallidum PN500 (strain: PN500)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium
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Genomic context

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See pks27 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
5

NW_008805072.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008805072.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication. Heidel AJ, et al. Genome Res, 2011 Nov. PMID 21757610, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
putative fatty acid synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_008805072.1 Reference assembly

    Range
    1615660..1624461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020583364.1 → XP_020429551.1  putative fatty acid synthase [Polysphondylium pallidum PN500]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D3BN60
    Conserved Domains (5) summary
    smart00829
    Location:1834 → 2132
    PKS_ER; Enoylreductase
    COG3321
    Location:45 → 984
    PksD; Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism]
    pfam08242
    Location:1420 → 1536
    Methyltransf_12; Methyltransferase domain
    cl00509
    Location:954 → 1217
    hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...
    cl25409
    Location:2154 → 2379
    SDR; Short-chain dehydrogenases/reductases (SDR)
Nucleotide Protein
Heading Accession and Version