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Hgh1 HGH1 homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 315094, updated on 27-Nov-2024

Summary

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Official Symbol
Hgh1provided by RGD
Official Full Name
HGH1 homologprovided by RGD
Primary source
RGD:1359226
See related
EnsemblRapid:ENSRNOG00000029238 AllianceGenome:RGD:1359226
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Brp16; Fam203a
Summary
Orthologous to human HGH1 (HGH1 homolog). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 74.7), Testes (RPKM 74.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Hgh1 in Genome Data Viewer
Location:
7q34
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (109972079..109975398)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (108091918..108094740)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (117434419..117437208)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III Neighboring gene WD repeat domain 97 Neighboring gene testis-specific serine kinase 5 Neighboring gene maestro heat-like repeat family member 1 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC94185

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein HGH1 homolog
Names
brain protein 16
family with sequence similarity 203, member A
protein FAM203A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007707.1 → NP_001007708.1  protein HGH1 homolog

    See identical proteins and their annotated locations for NP_001007708.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079158
    UniProtKB/Swiss-Prot
    Q6AY79
    Related
    ENSRNOP00000047549.2, ENSRNOT00000040981.4
    Conserved Domains (2) summary
    pfam04063
    Location:120 → 294
    DUF383; Domain of unknown function (DUF383)
    pfam04064
    Location:299 → 351
    DUF384; Domain of unknown function (DUF384)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    109972079..109975398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063263600.1 → XP_063119670.1  protein HGH1 homolog isoform X3

  2. XM_063263598.1 → XP_063119668.1  protein HGH1 homolog isoform X1

  3. XM_063263599.1 → XP_063119669.1  protein HGH1 homolog isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AY79.1 GenPept UniProtKB/Swiss-Prot:Q6AY79

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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