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CG3198 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31602, updated on 4-Jan-2025

Summary

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Official Symbol
CG3198provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0029887
Locus tag
Dmel_CG3198
See related
AllianceGenome:FB:FBgn0029887
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG3198
Summary
Predicted to enable mRNA binding activity. Involved in positive regulation of gene expression. Predicted to be part of U1 snRNP and U2-type prespliceosome. Is expressed in several structures, including anterior endoderm; central brain primordium; embryonic/larval midgut primordium; ganglia; and head mesoderm. Orthologous to human LUC7L3 (LUC7 like 3 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG3198 in Genome Data Viewer
Location:
6C4-6C4; 1-18 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (6668539..6673973, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (6562572..6568006, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Copper transporter 1A Neighboring gene Minichromosome maintenance 6 Neighboring gene NADH dehydrogenase (ubiquinone) ASHI subunit Neighboring gene Fumarase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Direct Testing for Allele-Specific Expression Differences Between Conditions. León-Novelo L, et al. G3 (Bethesda), 2018 Feb 2. PMID 29167272, Free PMC Article
  2. Analyzing the function of a hox gene: an evolutionary approach. Michaut L, et al. Dev Growth Differ, 2011 Dec. PMID 22150153
  3. The Output of Protein-Coding Genes Shifts to Circular RNAs When the Pre-mRNA Processing Machinery Is Limiting. Liang D, et al. Mol Cell, 2017 Dec 7. PMID 29174924, Free PMC Article
  4. A functional screen reveals an extensive layer of transcriptional and splicing control underlying RAS/MAPK signaling in Drosophila. Ashton-Beaucage D, et al. PLoS Biol, 2014 Mar. PMID 24643257, Free PMC Article
  5. Pre-messenger RNA processing factors in the Drosophila genome. Mount SM, et al. J Cell Biol, 2000 Jul 24. PMID 10908584, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA splice site recognition IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA splicing, via spliceosome ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of U1 snRNP ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
part_of U2-type prespliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG3198-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    6668539..6673973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_132109.2 → NP_572337.1  uncharacterized protein Dmel_CG3198 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572337.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W3X8
    Related
    FBpp0070951
    Conserved Domains (2) summary
    COG5200
    Location:1 → 313
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:3 → 322
    LUC7; LUC7 N_terminus
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W3X8 Q9W3X8

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