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CG12661 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31822, updated on 9-Dec-2024

Summary

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Official Symbol
CG12661provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0030071
Locus tag
Dmel_CG12661
See related
AllianceGenome:FB:FBgn0030071
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG12661
Summary
Predicted to be active in cytoplasm. Orthologous to human FAM136A (family with sequence similarity 136 member A). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG12661 in Genome Data Viewer
Location:
8B8-8B8; 1-25 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (8922888..8923687, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (8816921..8817720, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44111 Neighboring gene enhancer of rudimentary Neighboring gene retinal degeneration A Neighboring gene uncharacterized protein Neighboring gene mir-4964 stem loop

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Joint estimates of quantitative trait locus effect and frequency using synthetic recombinant populations of Drosophila melanogaster. Macdonald SJ, et al. Genetics, 2007 Jun. PMID 17435224, Free PMC Article
  2. Genomic organization of gypsy chromatin insulators in Drosophila melanogaster. Ramos E, et al. Genetics, 2006 Apr. PMID 16452134, Free PMC Article
  3. Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster. Ringrose L, et al. Dev Cell, 2003 Nov. PMID 14602076
  4. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Hosono C, et al. Nat Cell Biol, 2015 Dec. PMID 26551273
  5. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG12661-PA
CG12661-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    8922888..8923687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001272439.1 → NP_001259368.1  uncharacterized protein Dmel_CG12661, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259368.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W3A7
    Conserved Domains (1) summary
    pfam05811
    Location:11 → 121
    DUF842; Eukaryotic protein of unknown function (DUF842)

  2. NM_132283.2 → NP_572511.1  uncharacterized protein Dmel_CG12661, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572511.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W3A7
    Related
    FBpp0071208
    Conserved Domains (1) summary
    pfam05811
    Location:11 → 121
    DUF842; Eukaryotic protein of unknown function (DUF842)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W3A7 Q9W3A7

Gene LinkOut

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