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E230001N04Rik RIKEN cDNA E230001N04 gene [ Mus musculus (house mouse) ]

Gene ID: 320187, updated on 2-Nov-2024

Summary

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Official Symbol
E230001N04Rikprovided by MGI
Official Full Name
RIKEN cDNA E230001N04 geneprovided by MGI
Primary source
MGI:MGI:2443549
See related
AllianceGenome:MGI:2443549
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Lnc956
Summary
Acts upstream of or within several processes, including maintenance of protein location in cell; regulation of transcription by RNA polymerase II; and stem cell differentiation. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See E230001N04Rik in Genome Data Viewer
Location:
17 A3.3; 17 14.73 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (28740816..28743516)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (28522656..28525888)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42209 Neighboring gene TUB like protein 1 Neighboring gene STARR-seq mESC enhancer starr_42210 Neighboring gene FK506 binding protein 5 Neighboring gene predicted gene, 22146 Neighboring gene STARR-positive B cell enhancer ABC_E10942 Neighboring gene predicted gene, 41506 Neighboring gene STARR-seq mESC enhancer starr_42217 Neighboring gene armadillo repeat containing 12 Neighboring gene colipase-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lnc956-TRIM28-HSP90B1 complex on replication forks promotes CMG helicase retention to ensure stem cell genomic stability and embryogenesis. Zhang W, et al. Sci Adv, 2023 Jan 27. PMID 36706191, Free PMC Article
  2. Lnc956 regulates mouse embryonic stem cell differentiation in response to DNA damage in a p53-independent pathway. Ma H, et al. Sci Adv, 2023 Jan 20. PMID 36662856, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within maintenance of protein location in cell IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within stem cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    28740816..28743516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_385504.5 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177094.2: Suppressed sequence

    Description
    NM_177094.2: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
Nucleotide Protein Strain
Heading Accession and Version

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