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6530403H02Rik RIKEN cDNA 6530403H02 gene [ Mus musculus (house mouse) ]

Gene ID: 320739, updated on 17-Aug-2024

Summary

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Official Symbol
6530403H02Rikprovided by MGI
Official Full Name
RIKEN cDNA 6530403H02 geneprovided by MGI
Primary source
MGI:MGI:2444638
See related
AllianceGenome:MGI:2444638
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See 6530403H02Rik in Genome Data Viewer
Location:
3; 3 G1
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (120247983..120680381, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (120454334..120886732, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene ribonucleotide reductase M2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_08827 Neighboring gene predicted gene, 23733 Neighboring gene STARR-seq mESC enhancer starr_08828 Neighboring gene STARR-seq mESC enhancer starr_08830 Neighboring gene predicted gene, 25013 Neighboring gene STARR-seq mESC enhancer starr_08831 Neighboring gene STARR-seq mESC enhancer starr_08832 Neighboring gene STARR-seq mESC enhancer starr_08834 Neighboring gene predicted gene, 52615 Neighboring gene STARR-seq mESC enhancer starr_08835 Neighboring gene predicted gene, 40133 Neighboring gene STARR-seq mESC enhancer starr_08836 Neighboring gene STARR-positive B cell enhancer ABC_E10209 Neighboring gene STARR-positive B cell enhancer ABC_E6110 Neighboring gene predicted gene 10652 Neighboring gene RWD domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130170.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131028, AK032656, BE653192

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    120247983..120680381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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