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A630052C17Rik RIKEN cDNA A630052C17 gene [ Mus musculus (house mouse) ]

Gene ID: 320757, updated on 2-Nov-2024

Summary

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Official Symbol
A630052C17Rikprovided by MGI
Official Full Name
RIKEN cDNA A630052C17 geneprovided by MGI
Primary source
MGI:MGI:2444673
See related
AllianceGenome:MGI:2444673
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in medulla oblongata; medulla oblongata alar plate mantle layer; and medulla oblongata alar plate ventricular layer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See A630052C17Rik in Genome Data Viewer
Location:
11 A3.3; 11 16.46 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (29118053..29123540, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein SA, pseudogene 5 Neighboring gene STARR-seq mESC enhancer starr_29016 Neighboring gene STARR-seq mESC enhancer starr_29017 Neighboring gene STARR-seq mESC enhancer starr_29018 Neighboring gene STARR-seq mESC enhancer starr_29020 Neighboring gene polyribonucleotide nucleotidyltransferase 1 Neighboring gene STARR-positive B cell enhancer ABC_E1136 Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene predicted gene, 51940 Neighboring gene STARR-positive B cell enhancer ABC_E5213 Neighboring gene cilia and flagella associated protein 36

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000077.7 Chromosome 11 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188045.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX000351

  2. NR_188046.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX000351

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    29118053..29123540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177255.2: Suppressed sequence

    Description
    NM_177255.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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