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CG4004 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 32226, updated on 4-Jan-2025

Summary

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Official Symbol
CG4004provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0030418
Locus tag
Dmel_CG4004
See related
AllianceGenome:FB:FBgn0030418
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG18137; Dmel\CG4004
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG4004 in Genome Data Viewer
Location:
11B14-11B14; 1-39 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (12744212..12749785)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (12638245..12643818)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Smrter Neighboring gene long non-coding RNA:CR43963 Neighboring gene antisense RNA:CR45623 Neighboring gene long non-coding RNA:CR44619 Neighboring gene VSR interacting RNA Neighboring gene PAICS bifunctional enzyme

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hairy transcriptional repression targets and cofactor recruitment in Drosophila. Bianchi-Frias D, et al. PLoS Biol, 2004 Jul. PMID 15252443, Free PMC Article
  2. Protein landscape at Drosophila melanogaster telomere-associated sequence repeats. Antão JM, et al. Mol Cell Biol, 2012 Jun. PMID 22493064, Free PMC Article
  3. Oviposition behaviour in Drosophila melanogaster: Genetic and behavioural decoupling between oviposition acceptance and preference for natural fruits. Fanara JJ, et al. J Evol Biol, 2023 Jan. PMID 36357966
  4. Subcellular localisations of the CPTI collection of YFP-tagged proteins in Drosophila embryos. Lye CM, et al. Development, 2014 Oct. PMID 25294944, Free PMC Article
  5. Transcription factor networks in Drosophila melanogaster. Rhee DY, et al. Cell Rep, 2014 Sep 25. PMID 25242320, Free PMC Article

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

mobile_element

  • Loc: 12746438-12746698 mobile_element_type = transposon:H{}2372

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG4004-PA
CG4004-PC
CG4004-PD
CG4004-PE
CG4004-PF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    12744212..12749785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001298237.1 → NP_001285166.1  uncharacterized protein Dmel_CG4004, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001285166.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5BHZ5, Q9VYJ7
    Conserved Domains (1) summary
    pfam10545
    Location:19 → 104
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

  2. NM_132596.2 → NP_572824.1  uncharacterized protein Dmel_CG4004, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572824.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5BHZ5, Q9VYJ7
    Related
    FBpp0073519
    Conserved Domains (1) summary
    pfam10545
    Location:19 → 104
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

  3. NM_001298236.1 → NP_001285165.1  uncharacterized protein Dmel_CG4004, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001285165.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5BHZ5, Q9VYJ7
    Conserved Domains (1) summary
    pfam10545
    Location:19 → 104
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

  4. NM_167336.4 → NP_727638.2  uncharacterized protein Dmel_CG4004, isoform F [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7K230, Q95RL5, Q9VYJ6
    Conserved Domains (1) summary
    pfam10545
    Location:14 → 99
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

  5. NM_001272563.1 → NP_001259492.1  uncharacterized protein Dmel_CG4004, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259492.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1NZC1, M9PHP0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PHP0 M9PHP0
Q5BHZ5 Q5BHZ5
Q7K230 Q7K230
Q9VYJ6 Q9VYJ6
Q9VYJ7 Q9VYJ7

Gene LinkOut

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