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CG1622 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 32282, updated on 9-Dec-2024

Summary

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Official Symbol
CG1622provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0030468
Locus tag
Dmel_CG1622
See related
AllianceGenome:FB:FBgn0030468
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG1622
Summary
Predicted to be involved in mRNA splicing, via spliceosome. Part of precatalytic spliceosome. Is expressed in several structures, including antennal anlage; embryonic/larval midgut primordium; ganglia; head epidermis primordium; and mesoderm. Orthologous to human PRPF38B (pre-mRNA processing factor 38B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG1622 in Genome Data Viewer
Location:
11E9-11E9; 1-42 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (13297082..13299910)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (13191115..13193943)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Remoulade Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR45018 Neighboring gene Inositol 1,4,5-triphosphate kinase 2 Neighboring gene Peroxiredoxin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes. Herold N, et al. Mol Cell Biol, 2009 Jan. PMID 18981222, Free PMC Article
  2. The Central Region of the Drosophila Co-repressor Groucho as a Regulatory Hub. Kwong PN, et al. J Biol Chem, 2015 Dec 11. PMID 26483546, Free PMC Article
  3. spenito is required for sex determination in Drosophila melanogaster. Yan D, et al. Proc Natl Acad Sci U S A, 2015 Sep 15. PMID 26324914, Free PMC Article
  4. Comparative interactome analysis of α-arrestin families in human and Drosophila. Lee KT, et al. Elife, 2024 Jan 25. PMID 38270169, Free PMC Article
  5. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Phanse S, et al. Data Brief, 2016 Mar. PMID 26870755, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome HDA PubMed 
part_of precatalytic spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG1622-PA
CG1622-PB
CG1622-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    13297082..13299910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001298270.1 → NP_001285199.1  uncharacterized protein Dmel_CG1622, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001285199.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    X2JF51
    Conserved Domains (1) summary
    pfam03371
    Location:24 → 138
    PRP38; PRP38 family

  2. NM_001272583.2 → NP_001259512.1  uncharacterized protein Dmel_CG1622, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259512.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PHQ4
    Conserved Domains (1) summary
    pfam03371
    Location:24 → 172
    PRP38; PRP38 family

  3. NM_132644.3 → NP_572872.1  uncharacterized protein Dmel_CG1622, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572872.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VYE9
    Related
    FBpp0073588
    Conserved Domains (1) summary
    pfam03371
    Location:24 → 205
    PRP38; PRP38 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PHQ4 M9PHQ4
Q8MR43 Q8MR43
Q9VYE9 Q9VYE9
X2JF51 X2JF51

Gene LinkOut

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