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tax1bp1b Tax1 (human T-cell leukemia virus type I) binding protein 1b [ Danio rerio (zebrafish) ]

Gene ID: 324152, updated on 2-Nov-2024

Summary

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Official Symbol
tax1bp1bprovided by ZNC
Official Full Name
Tax1 (human T-cell leukemia virus type I) binding protein 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2872
See related
Ensembl:ENSDARG00000056856 AllianceGenome:ZFIN:ZDB-GENE-030131-2872
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tax1bp1; zgc:73219; zgc:77129; wu:fc20c12; wu:fc56e11
Summary
Predicted to enable metal ion binding activity. Predicted to act upstream of or within apoptotic process. Is expressed in mesenchyme pectoral fin. Orthologous to human TAX1BP1 (Tax1 binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See tax1bp1b in Genome Data Viewer
Location:
chromosome: 16
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (20805933..20870205, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21000114..21064386, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 5b Neighboring gene uncharacterized LOC110437981 Neighboring gene JAZF zinc finger 1b Neighboring gene uncharacterized LOC137487897 Neighboring gene 3-hydroxyisobutyrate dehydrogenase b Neighboring gene homeobox A13b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Tri-phasic expression of posterior Hox genes during development of pectoral fins in zebrafish: implications for the evolution of vertebrate paired appendages. Ahn D, et al. Dev Biol, 2008 Oct 1. PMID 18638469
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tax1-binding protein 1 homolog B
Names
Tax1 (human T-cell leukemia virus type I) binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430974.1 → NP_001417903.1  tax1-binding protein 1 homolog B isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR392024
    Related
    ENSDARP00000137903.2, ENSDART00000169541.2

  2. NM_212664.2 → NP_997829.2  tax1-binding protein 1 homolog B isoform 1

    Status: VALIDATED

    Source sequence(s)
    CR392024
    UniProtKB/Swiss-Prot
    Q6P132, Q6P958
    UniProtKB/TrEMBL
    A0A8M9PM76
    Related
    ENSDARP00000040726.6, ENSDART00000040727.8

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    20805933..20870205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213891.1 → XP_068069992.1  tax1-binding protein 1 homolog B isoform X3

  2. XM_005157957.4 → XP_005158014.1  tax1-binding protein 1 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A8M2B4U0
    Conserved Domains (4) summary
    COG1340
    Location:160 → 476
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
    COG5281
    Location:342 → 646
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
    TIGR02101
    Location:247 → 441
    IpaC_SipC; type III secretion target, IpaC/SipC family
    pfam15233
    Location:156 → 268
    SYCE1; Synaptonemal complex central element protein 1

  3. XM_021466620.2 → XP_021322295.1  tax1-binding protein 1 homolog B isoform X1

    UniProtKB/Swiss-Prot
    Q6P132, Q6P958
    UniProtKB/TrEMBL
    A0A8M9PM76
    Conserved Domains (2) summary
    cl25732
    Location:22 → 714
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27210
    Location:249 → 344
    Mnd1; Mnd1 family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6P132.3 GenPept UniProtKB/Swiss-Prot:Q6P132

Gene LinkOut

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