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wu:fc30c06 wu:fc30c06 [ Danio rerio (zebrafish) ]

Gene ID: 324469, updated on 4-Jan-2025

Summary

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Official Symbol
wu:fc30c06provided by ZNC
Official Full Name
wu:fc30c06provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3190
See related
Ensembl:ENSDARG00000103865 AllianceGenome:ZFIN:ZDB-GENE-030131-3190
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc30c06
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to several human genes including ZNF222 (zinc finger protein 222); ZNF627 (zinc finger protein 627); and ZNF670 (zinc finger protein 670). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See wu:fc30c06 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (73256874..73266953, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (71603309..71612425, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene NLR family CARD domain-containing protein 3-like Neighboring gene si:cabz01021433.2 Neighboring gene si:cabz01021430.2 Neighboring gene si:cabz01021428.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC324469

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327916.1 → NP_001314845.1  uncharacterized protein LOC324469

    Status: VALIDATED

    Source sequence(s)
    CABZ01021432, CABZ01021433
    UniProtKB/TrEMBL
    A0A0R4ISU2, A0A8M1P8I0
    Related
    ENSDARP00000138031.1, ENSDART00000158194.3
    Conserved Domains (3) summary
    COG5048
    Location:146 → 390
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:94 → 114
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:106 → 131
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    73256874..73266953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068219523.1 → XP_068075624.1  uncharacterized protein LOC324469 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials