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hydra hydra [ Drosophila melanogaster (fruit fly) ]

Gene ID: 33058, updated on 18-Sep-2024

Summary

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Official Symbol
hydraprovided by FlyBase
Official Full Name
hydraprovided by FlyBase
Primary source
FLYBASE:FBgn0031128
Locus tag
Dmel_CG1338
See related
AllianceGenome:FB:FBgn0031128
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG1338; Dmel\CG1338
Orthologs
all
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Genomic context

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See hydra in Genome Data Viewer
Location:
19E1-19E1; 1-65 cM
Exon count:
11
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (20670832..20677063, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (20541859..20548090, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR45466 Neighboring gene Cytochrome P450 6v1 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR43862 Neighboring gene long non-coding RNA:CR45610

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of hydra, a recently evolved testis-expressed gene with nine alternative first exons in Drosophila melanogaster. Chen ST, et al. PLoS Genet, 2007 Jul. PMID 17616977, Free PMC Article
  2. Single-cell transcriptome sequencing reveals Wolbachia-mediated modification in early stages of Drosophila spermatogenesis. Dou W, et al. Proc Biol Sci, 2023 Jan 11. PMID 36629101, Free PMC Article
  3. A fly model establishes distinct mechanisms for synthetic CRISPR/Cas9 sex distorters. Fasulo B, et al. PLoS Genet, 2020 Mar. PMID 32168334, Free PMC Article
  4. Lack of global meiotic sex chromosome inactivation, and paucity of tissue-specific gene expression on the Drosophila X chromosome. Mikhaylova LM, et al. BMC Biol, 2011 May 4. PMID 21542906, Free PMC Article
  5. TRF4, the novel TBP-related protein of Drosophila melanogaster, is concentrated at the endoplasmic reticulum and copurifies with proteins participating in the processes associated with endoplasmic reticulum. Kurshakova MM, et al. J Cell Biochem, 2019 May. PMID 30426565

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Analysis of sequence polymorphism and divergence of hydra shows that it has evolved under positive selection in the lineage leading to D. melanogaster.
    Title: Evolution of hydra, a recently evolved testis-expressed gene with nine alternative first exons in Drosophila melanogaster.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
hydra
Names
CG1338-PA
CG1338-PB
CG1338-PD
CG1338-PF
CG1338-PG
CG1338-PH
CG1338-PI
CG1338-PJ
hydra-PA
hydra-PB
hydra-PD
hydra-PF
hydra-PG
hydra-PH
hydra-PI
hydra-PJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    20670832..20677063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_134561.7 → NP_608405.4  hydra, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_608405.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1JJS5, F3YDA7, Q8IQ35
    Related
    FBpp0076986
    Conserved Domains (1) summary
    pfam12302
    Location:28 → 283
    DUF3629; Protein of unknown function (DUF3629)

  2. NM_001258853.1 → NP_001245782.1  hydra, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001245782.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1JJS5, F3YDA7, Q8IQ35
    Conserved Domains (1) summary
    pfam12302
    Location:28 → 283
    DUF3629; Protein of unknown function (DUF3629)

  3. NM_001258854.1 → NP_001245783.1  hydra, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001245783.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F3YDA7, Q9VRB5
    Conserved Domains (1) summary
    pfam12302
    Location:28 → 283
    DUF3629; Protein of unknown function (DUF3629)

  4. NM_001169341.2 → NP_001162812.2  hydra, isoform J [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001162812.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1JJS5, F3YDA7, Q8IQ35
    Conserved Domains (1) summary
    pfam12302
    Location:28 → 283
    DUF3629; Protein of unknown function (DUF3629)

  5. NM_001258855.1 → NP_001245784.1  hydra, isoform H [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001245784.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F3YDA7, Q9VRB5
    Conserved Domains (1) summary
    pfam12302
    Location:28 → 283
    DUF3629; Protein of unknown function (DUF3629)

  6. NM_001258852.1 → NP_001245781.1  hydra, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001245781.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F3YDA7, Q9VRB5
    Conserved Domains (1) summary
    pfam12302
    Location:28 → 283
    DUF3629; Protein of unknown function (DUF3629)

  7. NM_001258856.1 → NP_001245785.1  hydra, isoform I [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001245785.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F3YDA7, Q9VRB5
    Conserved Domains (1) summary
    pfam12302
    Location:28 → 283
    DUF3629; Protein of unknown function (DUF3629)

  8. NM_167711.3 → NP_728358.1  hydra, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_728358.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F3YDA7, Q9VRB5
    Related
    FBpp0076987
    Conserved Domains (1) summary
    pfam12302
    Location:28 → 283
    DUF3629; Protein of unknown function (DUF3629)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8IQ35 Q8IQ35
Q9VRB5 Q9VRB5

Gene LinkOut

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