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CG5556 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 33320, updated on 9-Dec-2024

Summary

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Official Symbol
CG5556provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0031332
Locus tag
Dmel_CG5556
See related
AllianceGenome:FB:FBgn0031332
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG5556
Summary
Predicted to enable phosphatase activity. Is expressed in spermatozoon. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG5556 in Genome Data Viewer
Location:
22A1-22A1; 2-3 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (1351728..1352868, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (1351728..1352868, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45005 Neighboring gene long non-coding RNA:CR45006 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for large domains of similarly expressed genes in the Drosophila genome. Spellman PT, et al. J Biol, 2002. PMID 12144710, Free PMC Article
  2. The B-type lamin is required for somatic repression of testis-specific gene clusters. Shevelyov YY, et al. Proc Natl Acad Sci U S A, 2009 Mar 3. PMID 19218438, Free PMC Article
  3. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  4. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
  5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG5556-PA
CG5556-PB
NP_001285559.1
NP_608595.2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    1351728..1352868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_134751.3 → NP_608595.2  uncharacterized protein Dmel_CG5556, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_608595.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VQ01, S5NWT1
    Related
    FBpp0077613
    Conserved Domains (2) summary
    pfam13419
    Location:30 → 212
    HAD_2; Haloacid dehalogenase-like hydrolase
    cl21460
    Location:40 → 249
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. NM_001298630.1 → NP_001285559.1  uncharacterized protein Dmel_CG5556, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001285559.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VQ01, S5NWT1
    Conserved Domains (2) summary
    pfam13419
    Location:30 → 212
    HAD_2; Haloacid dehalogenase-like hydrolase
    cl21460
    Location:40 → 249
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VQ01 Q9VQ01

Gene LinkOut

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