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grt1 transcription factor Grt1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 3361180, updated on 18-Sep-2024

Summary

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Official Symbol
grt1
Official Full Name
transcription factor Grt1
Primary source
PomBase:SPBPB8B6.04c
Locus tag
SPOM_SPBPB8B6.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAPB8B6.04c
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Genomic context

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See grt1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (47369..51181, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene urea transporter Neighboring gene ncRNA Neighboring gene acetamidase Neighboring gene ncRNA Neighboring gene L-asparaginase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasma membrane fluoride export channel Fex2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High dosage expression of a zinc finger protein, Grt1, suppresses a mutant of fission yeast slp1(+), a homolog of CDC20/p55CDC/Fizzy. Yamada HY, et al. J Cell Sci, 2000 Nov. PMID 11058086
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific ISM
Inferred from Sequence Model
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISM
Inferred from Sequence Model
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II ISM
Inferred from Sequence Model
more info
  
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
transcription factor Grt1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    47369..51181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020940.3 → NP_001018765.1  transcription factor Grt1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_001018765.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9C469
    Conserved Domains (2) summary
    cd12148
    Location:165 → 565
    fungal_TF_MHR; fungal transcription factor regulatory middle homology region
    cd00067
    Location:9 → 42
    GAL4; GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like GAL4. Domain consists of two helices organized around a Zn(2)Cys(6 )motif; Binds to sequences containing 2 DNA half sites comprised of 3-5 C/G combinations
Nucleotide Protein
Heading Accession and Version

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