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RPS15A ribosomal protein S15a [ Bos taurus (domestic cattle) ]

Gene ID: 337888, updated on 29-Jan-2025

Summary

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Gene symbol
RPS15A
Gene description
ribosomal protein S15a
See related
BGD:BT24610; Ensembl:ENSBTAG00000020733
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See RPS15A in Genome Data Viewer
Location:
chromosome: 25
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (16423484..16429309, complement)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 11B-like Neighboring gene uncharacterized LOC132343849 Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene SMG1 nonsense mediated mRNA decay associated PI3K related kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Ishiwata H, et al. Mol Reprod Dev, 2003 May. PMID 12658628
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC133517

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS8
Names
40S ribosomal protein S15a
NP_001032520.1
XP_059737146.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037443.2 → NP_001032520.1  small ribosomal subunit protein uS8

    See identical proteins and their annotated locations for NP_001032520.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108231
    UniProtKB/Swiss-Prot
    Q76I82
    UniProtKB/TrEMBL
    E1BLY1
    Related
    ENSBTAP00070029284.1, ENSBTAT00070049245.1
    Conserved Domains (1) summary
    PTZ00158
    Location:1 → 130
    PTZ00158; 40S ribosomal protein S15A; Provisional

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    16423484..16429309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881163.1 → XP_059737146.1  small ribosomal subunit protein uS8 isoform X1

    UniProtKB/Swiss-Prot
    Q76I82
    UniProtKB/TrEMBL
    E1BLY1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q76I82.1 GenPept UniProtKB/Swiss-Prot:Q76I82

Gene LinkOut

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