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PAG9 pregnancy-associated glycoprotein 9 [ Bos taurus (domestic cattle) ]

Gene ID: 337903, updated on 29-Jan-2025

Summary

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Gene symbol
PAG9
Gene description
pregnancy-associated glycoprotein 9
See related
BGD:BT10771; Ensembl:ENSBTAG00000026102
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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Genomic context

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See PAG9 in Genome Data Viewer
Location:
chromosome: 29
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (39237416..39246684, complement)

Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene pregnancy-associated glycoprotein 1-like Neighboring gene pregnancy-associated glycoprotein 1-like Neighboring gene pregnancy-associated glycoprotein 1-like Neighboring gene pregnancy-associated glycoprotein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. The diversity and evolutionary relationships of the pregnancy-associated glycoproteins, an aspartic proteinase subfamily consisting of many trophoblast-expressed genes. Xie S, et al. Proc Natl Acad Sci U S A, 1997 Nov 25. PMID 9371757, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pregnancy-associated glycoprotein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_176620.2 → NP_788793.1  pregnancy-associated glycoprotein 9 precursor

    See identical proteins and their annotated locations for NP_788793.1

    Status: PROVISIONAL

    Source sequence(s)
    AF020511
    UniProtKB/TrEMBL
    A4FV16, O46497
    Related
    ENSBTAP00070040110.1, ENSBTAT00070066039.1
    Conserved Domains (3) summary
    pfam00026
    Location:71 → 378
    Asp; Eukaryotic aspartyl protease
    pfam07966
    Location:16 → 44
    A1_Propeptide; A1 Propeptide
    cl11403
    Location:62 → 376
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    39237416..39246684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010820996.3 → XP_010819298.1  pregnancy-associated glycoprotein 9 isoform X1

    UniProtKB/TrEMBL
    A4FV16
    Conserved Domains (3) summary
    pfam00026
    Location:45 → 352
    Asp; Eukaryotic aspartyl protease
    pfam07966
    Location:1 → 18
    A1_Propeptide; A1 Propeptide
    cl11403
    Location:36 → 350
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases
Nucleotide Protein Strain
Heading Accession and Version

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