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Rcd-1r Rcd-1 related [ Drosophila melanogaster (fruit fly) ]

Gene ID: 34229, updated on 4-Jan-2025

Summary

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Official Symbol
Rcd-1rprovided by FlyBase
Official Full Name
Rcd-1 relatedprovided by FlyBase
Primary source
FLYBASE:FBgn0032089
Locus tag
Dmel_CG9573
See related
AllianceGenome:FB:FBgn0032089
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG9573; Dmel\CG9573; Drcd-1r; Zeus
Summary
Involved in spermatogenesis. Located in nucleus. Is expressed in several structures, including adult descending neurons; brain; gonad; larval central brain; and male germline cell. Orthologous to human CNOT9 (CCR4-NOT transcription complex subunit 9). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

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See Rcd-1r in Genome Data Viewer
Location:
29F7-29F7; 2-34 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9012885..9014068, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9012885..9014068, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Trypsin 29F Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44352 Neighboring gene uncharacterized protein Neighboring gene Dpr-interacting protein zeta Neighboring gene long non-coding RNA:CR44483

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Intronic gRNAs for the Construction of Minimal Gene Drive Systems. Nash A, et al. Front Bioeng Biotechnol, 2022. PMID 35646834, Free PMC Article
  2. Development of synthetic selfish elements based on modular nucleases in Drosophila melanogaster. Simoni A, et al. Nucleic Acids Res, 2014 Jun. PMID 24803674, Free PMC Article
  3. Rapid Cis-Trans Coevolution Driven by a Novel Gene Retroposed from a Eukaryotic Conserved CCR4-NOT Component in Drosophila. Krinsky BH, et al. Genes (Basel), 2021 Dec 26. PMID 35052398, Free PMC Article
  4. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. Chen S, et al. EMBO J, 2012 Jun 13. PMID 22543869, Free PMC Article
  5. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Arthur RK, et al. Genome Res, 2014 Jul. PMID 24985914, Free PMC Article

See all (41) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatogenesis IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in spermatogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
  
part_of CCR4-NOT core complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Rcd-1 related
Names
CG9573-PA
Drcd-1 related
Rcd-1r-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    9012885..9014068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_135425.3 → NP_609269.1  Rcd-1 related [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_609269.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E0ZR36, E0ZR38, E0ZR47, Q9VLF2
    Related
    FBpp0079380
    Conserved Domains (1) summary
    pfam04078
    Location:32 → 279
    Rcd1; Cell differentiation family, Rcd1-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VLF2 Q9VLF2

Gene LinkOut

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